PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G296500.1
Common NamePHAVU_003G296500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 168aa    MW: 18258.9 Da    PI: 7.9476
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G296500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.92.3e-0556951054
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        + R ++i +++  L++l+ +      +K + +++Le A+eYI  L
  Phvul.003G296500.1 56 KERKEKIGERIVALQQLVSPY-----GKTDTSSVLEDAMEYIGFL 95
                        789999************999.....9***************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.1E-1045115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.6114695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-1148110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.003352101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-556100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MIASSFCNAD SMFSREEGID VRKMMEHKRS PCSVDQSSYT SIASKRQKAD LSISTKERKE  60
KIGERIVALQ QLVSPYGKTD TSSVLEDAME YIGFLHKQVK LLSAPYLETS AAAKMQGMDA  120
CSLRSGGLCL VPVSFTIGVA ESNGADIWAP IKTATSPKLE KDVSQFH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G296500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310980.0KT031098.1 Glycine max clone HN_CCL_42 bHLH transcription factor (Glyma02g15520.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156560.11e-122hypothetical protein PHAVU_003G296500g
SwissprotQ7XJU25e-58BH153_ARATH; Transcription factor bHLH153
TrEMBLV7CEI31e-120V7CEI3_PHAVU; Uncharacterized protein
STRINGXP_007156560.11e-121(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108133138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.52e-60bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]