PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.003G293800.1 | ||||||||
Common Name | PHAVU_003G293800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 403aa MW: 44488.5 Da PI: 9.2647 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.9 | 2e-32 | 264 | 319 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a+++LGGs+ AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Phvul.003G293800.1 264 KQRRCWSPELHRRFVNALQKLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLH 319 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.78E-18 | 261 | 322 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.461 | 261 | 321 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-29 | 262 | 322 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-27 | 264 | 319 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.0E-8 | 266 | 317 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 403 aa Download sequence Send to blast |
MGSVPAELSL DLRPSSVPKT ITDFLRHLSS ASDRLATLHD FLARLEDELR KIHAFKRELP 60 LSMLLLNDAI SLLKAESQKC RPRDSPPALE EFIPLKKEHD RNDGNNHNDD NDNDNECRDK 120 RNWLSSVQLW NNTTTNNNAS DRKQQQQLHK LETKKIEEGQ SVGEDPFQSC SNRNGGRRAF 180 MPFSRPSSSS SSVPVATMGL AAATKEEKEE SVMNRLCLQT PSSVKEGCGS RGSRSSSNRA 240 VSSSSPPTVH PSLRASSLQQ TARKQRRCWS PELHRRFVNA LQKLGGSQAA TPKQIRELMQ 300 VDGLTNDEVK SHLQKYRLHT RRVPSASGNQ PVVVLGGLWM SQDQYNESSK VSSSGSGSPQ 360 SPLHLTAGSG GGTSPSMEDD EDARSESYSW KSHMHKPGKV DV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-13 | 264 | 317 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-13 | 264 | 317 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-13 | 264 | 317 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-13 | 264 | 317 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.003G293800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-162 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007156531.1 | 0.0 | hypothetical protein PHAVU_003G293800g | ||||
TrEMBL | V7CGW6 | 0.0 | V7CGW6_PHAVU; Uncharacterized protein | ||||
STRING | XP_007156531.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G03500.1 | 4e-49 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.003G293800.1 |
Entrez Gene | 18636437 |