PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G286400.1
Common NamePHAVU_003G286400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 333aa    MW: 37170.1 Da    PI: 4.5965
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G286400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.1e-12164207654
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Phvul.003G286400.1 164 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 207
                         589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-15160219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9164207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-15165218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.62E-5165211No hitNo description
CDDcd048730.00598258298No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MELSQLGFLD ELVAPRRDTW NAFSTGFLDL LSNGWTFDTF LENPSLATSN SLFGAFSAPL  60
DRRSECPFIN DVPPYPFADG FAMPLPELHP GNDDPPPPLP PTMEDKEIAF HDNNNNSNNF  120
EETKGVCKVE EQGSEIPLFN IGMSDDGERK PKTKKLEGQP SKNLMAERRR RKRLNDRLSM  180
LRSIVPKISK MDRTSILGDT IDYMKELLER IGKLQEEEVE GGTSQINLLG ISKEQIKPNE  240
AMVRNSPKFD VERRDQDTRI SICCATKPGL LLSTVNTLEA LGLEIQQCVV SSFNDFSMEA  300
SCSEVGDQRN CIGPEEIKQS LFRNAGFVGK CL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166173ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G286400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311121e-131KT031112.1 Glycine max clone HN_CCL_214 bHLH transcription factor (Glyma08g37240.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156443.10.0hypothetical protein PHAVU_003G286400g
SwissprotQ9LSL15e-81BH093_ARATH; Transcription factor bHLH93
TrEMBLV7CE180.0V7CE18_PHAVU; Uncharacterized protein
STRINGXP_007156443.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.14e-83beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]