PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G284000.1
Common NamePHAVU_003G284000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 347aa    MW: 39550.4 Da    PI: 7.2132
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G284000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.3e-191663148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEde+l d++ ++G gtW+t +++ g++R +k+c++rw +yl
  Phvul.003G284000.1 16 KGPWTAEEDEKLMDYISKHGRGTWRTLPKHAGLNRNGKSCRLRWENYL 63
                        79********************************************97 PP
2Myb_DNA-binding521.6e-1669112146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg++T+eE++ +++++  lG++ W++Ia  ++ gRt++++k++w++
  Phvul.003G284000.1  69 RGKFTQEEELFIINLHSVLGNK-WSKIATSLP-GRTDNEIKNYWNT 112
                         89********************.*********.***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-24966IPR009057Homeodomain-like
PROSITE profilePS5129419.3611163IPR017930Myb domain
SuperFamilySSF466894.87E-3113110IPR009057Homeodomain-like
SMARTSM007171.2E-141565IPR001005SANT/Myb domain
PfamPF002493.0E-161663IPR001005SANT/Myb domain
CDDcd001671.07E-101863No hitNo description
PROSITE profilePS5129426.49664118IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-2567118IPR009057Homeodomain-like
SMARTSM007174.1E-1568116IPR001005SANT/Myb domain
PfamPF002495.1E-1569112IPR001005SANT/Myb domain
CDDcd001671.44E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGRSPSSSSN ESNVKKGPWT AEEDEKLMDY ISKHGRGTWR TLPKHAGLNR NGKSCRLRWE  60
NYLKPDIKRG KFTQEEELFI INLHSVLGNK WSKIATSLPG RTDNEIKNYW NTTIRKKLLQ  120
KGIDPETHRP RTSLNHLMNL FPLLGMSNLG TSMSSWTNPT GLQADVTQLA KLQLLQNMLQ  180
LMNNTSLINI TNPYLVDNQI LNPPLDTFLN GTNTLQVRDP MLYANPHGNN IPNLFSQTHS  240
DYSLQNIFKS GIEIENESKY QEVLSYTQNI NTSQQNEVEN LLPALVASCT PRTTSFNKME  300
SNYNAAQKST QSPFSTTFEA WEKFLIDDDD ETSSSYWKEI LEYVYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31161187108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G284000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156413.10.0hypothetical protein PHAVU_003G284000g
TrEMBLV7CDZ10.0V7CDZ1_PHAVU; Uncharacterized protein
STRINGXP_007156413.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.27e-73myb domain protein 9