PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.003G283000.2

Common Name

PHAVU_003G283000g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

G2-like

Protein Properties

Length: 337aa MW: 37382.5 Da PI: 9.7011

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.003G283000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.8	1.9e-31	169	222	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv++v+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Phvul.003G283000.2 169 PRMRWTTTLHARFVHVVQLLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 222 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.09E-15	166	222	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.7E-27	167	222	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.2E-23	169	222	IPR006447	Myb domain, plants
Pfam	PF00249	5.2E-7	170	221	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MELFPAQPDL SLQITPPNSK STSSNWKRST EEEMDLGFWK RALESKTTTS LVKTNTSLVK 60 TDLSLSNPRP SSSNTNIPNT NTNLIHHFQN NINNNNGNNP IQQNHFFQQD LGFLRPIRGI 120 PVYQNPSLSF PHPHAPSNTP TPSNPFLSQP LINSRFLSRF PPKRHMRAPR MRWTTTLHAR 180 FVHVVQLLGG HERATPKSVL ELMDVKDLTL AHVKSHLQMY RTVKTTDRAA ASSGQCDAYD 240 NGSSGDTSEE SPRIKQARTS VNEDNENGGL WDNSSREAWL HGKPKVDSIG NVPSVEGMDP 300 KGQSNEISDG NSSSNTPETS AKKPNLDLEF TLGRSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	170	224	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	170	224	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-16	170	224	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-16	170	224	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-16	170	224	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-16	170	224	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	170	224	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	170	224	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	170	224	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	170	224	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	170	224	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	170	224	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.003G283000.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	3e-43	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007156400.1	0.0	hypothetical protein PHAVU_003G283000g
Swissprot	Q9C616	7e-83	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	V7CE36	0.0	V7CE36_PHAVU; Uncharacterized protein
STRING	XP_007156399.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	1e-64	G2-like family protein

Link Out ? help Back to Top
Phytozome	Phvul.003G283000.2
Entrez Gene	18636326

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]