PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G275800.1
Common NamePHAVU_003G275800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Dof
Protein Properties Length: 481aa    MW: 53028.3 Da    PI: 8.0306
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G275800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.28.5e-39121180261
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                         ++k l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GGa+rnvPvG+g+rknk+s
  Phvul.003G275800.1 121 PDKVLQCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGAIRNVPVGAGKRKNKHS 180
                         78999*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-29118178IPR003851Zinc finger, Dof-type
PfamPF027013.8E-32122179IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.416125179IPR003851Zinc finger, Dof-type
PROSITE patternPS013610127163IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MSQDRDSAIK LFGADIQNTH IPIKPTTPFT DLHSLTQIQP LPQPIIIIMN GLEESTNYEV  60
DVPLNEEVSS KLTEPQEDGS DTPRNICKNP SLKLVTKVVH RTNDHRNPKR NIDEEKVLKK  120
PDKVLQCPRC NSLETKFCYF NNYNVNQPRH FCKNCQRYWT AGGAIRNVPV GAGKRKNKHS  180
ALLYCQKPVT PDGASAIQTH SSASSDDMIL SSNELSVTSR PIKEREETPL SESLETVLSL  240
NGQRKFDVDF STIKDDGEDP SSNSIRSDEI EQVGLAQHSN GLIPLHPFHY HSVPSWSYQW  300
NPCWNVKEFR SSSTSSSLPY TGSPTMMAVS GFSIPTVMLP AAPYSYSGFM SSLAGQKEES  360
SLIGSAFSGI SLSSSSVSIS TSSGDRSPTL GKHSRDGSTP KEAAMKQNLW VPKTVRINGP  420
EEAANSSIWT TLGRKSDQSK IIIKGSVFKS FESKTSADHN QIRRTNPAAF SRSESFQESL  480
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G275800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156312.10.0hypothetical protein PHAVU_003G275800g
TrEMBLV7CHC80.0V7CHC8_PHAVU; Uncharacterized protein
STRINGXP_007156312.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35023165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.21e-51cycling DOF factor 2