PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G258100.1 | ||||||||
Common Name | PHAVU_003G258100g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | SRS | ||||||||
Protein Properties | Length: 309aa MW: 33688 Da PI: 7.1526 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 211.3 | 2.4e-65 | 100 | 239 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 +g++sCqdCGnqakkdC h+RCRtCCksrg+dC+thvkstWvpa+krrerqqqla ++++++ ++++ skr+r+ +++t+l+s Phvul.003G258100.1 100 EGGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHVKSTWVPASKRRERQQQLAVLQEQQQ--QQRDLSKRPRDP-------TACTRLPS 181 6889****************************************************976664..467778888875.......77888887 PP DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +e le ++P+ vss+a frcvrvs v+d+++ +aYqtav+igGhvfkGiLyd+G+e+ Phvul.003G258100.1 182 SE---GLEEGHFPSLVSSPAEFRCVRVSCVEDADDRYAYQTAVNIGGHVFKGILYDYGPEN 239 74...679999************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.3E-64 | 102 | 238 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.6E-27 | 104 | 146 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.4E-25 | 189 | 237 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MANLFSLSGG RGSNNNQQDT TTNNEIPAAE TLFWYAKNDD VSSYRGFELW NQQQEQHVMP 60 PHVRPLLQRD LYSSGVGPSR GVSDDHSSSR SAFVAMRAAE GGISCQDCGN QAKKDCPHMR 120 CRTCCKSRGY DCQTHVKSTW VPASKRRERQ QQLAVLQEQQ QQQRDLSKRP RDPTACTRLP 180 SSEGLEEGHF PSLVSSPAEF RCVRVSCVED ADDRYAYQTA VNIGGHVFKG ILYDYGPENS 240 NNNNSNNSNN YMAGETSAGV AGAQPLNLTA SGVVSSSGAL VDPSSLYSAP VNTFMGGSGT 300 QFFPHTRS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G258100.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007156095.1 | 0.0 | hypothetical protein PHAVU_003G258100g | ||||
Swissprot | Q9SD40 | 1e-78 | SRS1_ARATH; Protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | V7CD60 | 0.0 | V7CD60_PHAVU; Uncharacterized protein | ||||
STRING | XP_007156095.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF882 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 8e-63 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G258100.1 |
Entrez Gene | 18636071 |
Publications ? help Back to Top | |||
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