PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.003G251800.1 | ||||||||
Common Name | PHAVU_003G251800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 197aa MW: 23470.8 Da PI: 9.7351 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56 | 7e-18 | 46 | 99 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq++ Le+ F +++++ e++ +LA +lg++ rqV vWFqNrR ++k Phvul.003G251800.1 46 KKRKLSAEQVNLLEKNFCIQHKLQSERKDQLAFELGMDPRQVAVWFQNRRFRWK 99 66799************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 105.1 | 5.4e-34 | 46 | 136 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkr+ls+eqv+lLE++F ++kL++erK +la eLg++prqvavWFqnrR R+ktk+lE++y+ Lk+ +++ ++++L++ v +L+e+l Phvul.003G251800.1 46 KKRKLSAEQVNLLEKNFCIQHKLQSERKDQLAFELGMDPRQVAVWFQNRRFRWKTKKLEEEYSNLKNLHETTLLQKCHLQTRVLNLEEQLL 136 9**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.791 | 41 | 101 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.6E-16 | 44 | 105 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.13E-18 | 45 | 109 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.9E-15 | 46 | 99 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.74E-12 | 46 | 102 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-19 | 48 | 108 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 76 | 99 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 197 aa Download sequence Send to blast |
MNHRAVEAHM RLFSHQYPTA FTQLTPPQQA KPRRKRNKNG VMGSTKKRKL SAEQVNLLEK 60 NFCIQHKLQS ERKDQLAFEL GMDPRQVAVW FQNRRFRWKT KKLEEEYSNL KNLHETTLLQ 120 KCHLQTRVLN LEEQLLEAKK EIQQLQERGE RASTKHLLEA VNPPFLGEFR EEDYDYADVF 180 YIPETHYISG MEWINF* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 33 | 48 | RKRNKNGVMGSTKKRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.003G251800.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-104 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007156020.1 | 1e-146 | hypothetical protein PHAVU_003G251800g | ||||
Swissprot | O23208 | 6e-58 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | V7CCY3 | 1e-144 | V7CCY3_PHAVU; Uncharacterized protein | ||||
STRING | XP_007156020.1 | 1e-145 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4789 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36740.1 | 3e-60 | homeobox protein 40 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.003G251800.1 |
Entrez Gene | 18636006 |
Publications ? help Back to Top | |||
---|---|---|---|
|