PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G230100.1 | ||||||||
Common Name | PHAVU_003G230100g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | LSD | ||||||||
Protein Properties | Length: 150aa MW: 15523.1 Da PI: 7.9166 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 46.5 | 6.2e-15 | 28 | 52 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+sV+Ca+C++V Phvul.003G230100.1 28 CSGCRNLLMYPAGATSVCCAVCNAV 52 ************************9 PP | |||||||
2 | zf-LSD1 | 45.5 | 1.2e-14 | 67 | 91 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA++V+C++C+tV Phvul.003G230100.1 67 CGGCHTLLMYIRGATNVQCSCCHTV 91 ************************9 PP | |||||||
3 | zf-LSD1 | 41.8 | 1.8e-13 | 105 | 129 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V Phvul.003G230100.1 105 CGNCRMLLMYQYGARSVKCAVCNFV 129 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.90.10.10 | 4.5E-4 | 22 | 126 | No hit | No description |
TIGRFAMs | TIGR01053 | 4.8E-14 | 25 | 54 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.5E-12 | 28 | 52 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 9.49E-5 | 28 | 126 | IPR011031 | Multihaem cytochrome |
TIGRFAMs | TIGR01053 | 7.9E-15 | 64 | 93 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.8E-12 | 67 | 91 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.2E-12 | 102 | 132 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-12 | 105 | 129 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MPVPLAPYPA PTAPYTPPAN GAQSQLVCSG CRNLLMYPAG ATSVCCAVCN AVTGVPPPGT 60 EMAQLVCGGC HTLLMYIRGA TNVQCSCCHT VNLALEANQV AHVNCGNCRM LLMYQYGARS 120 VKCAVCNFVT SVGATASTTE QKFNTVTIQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G230100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090415 | 1e-176 | BT090415.1 Soybean clone JCVI-FLGm-4M18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007155770.1 | 1e-103 | hypothetical protein PHAVU_003G230100g | ||||
Swissprot | Q93ZB1 | 7e-81 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | V7CCA8 | 1e-102 | V7CCA8_PHAVU; Uncharacterized protein | ||||
STRING | XP_007155770.1 | 1e-103 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8187 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 7e-81 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G230100.1 |
Entrez Gene | 18635782 |
Publications ? help Back to Top | |||
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