PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G222600.1 | ||||||||
Common Name | PHAVU_003G222600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 25399.9 Da PI: 5.8974 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.9 | 2.2e-17 | 68 | 117 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f t+++Aa+a++ a++ ++g Phvul.003G222600.1 68 TYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFPTPDMAARAHDVAALTIKG 117 69****998.**********843...6**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.6E-36 | 68 | 131 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.3E-21 | 68 | 126 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.7E-12 | 68 | 117 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-31 | 68 | 126 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.024 | 68 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-10 | 69 | 80 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.03E-31 | 69 | 127 | No hit | No description |
PRINTS | PR00367 | 6.6E-10 | 91 | 107 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MDMEESNPME REVQPTTSSS SFSITPSTST STSSSSSSSS YIDQQPSNTK DKKNKRTNIN 60 TNHGNHPTYR GVRMRQWGKW VSEIREPRKK SRIWLGTFPT PDMAARAHDV AALTIKGSSA 120 FLNFPELAAE LPRPATNSPK DIQVAAAKAA ALDFNHRSHE AESELSRGGS ISNSSSNSSL 180 KGEDDTFMDL PDLSPDLSHG ADEFHYSSAW LVTGPELGFR LEEPFLWESY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-17 | 66 | 125 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G222600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007155687.1 | 1e-169 | hypothetical protein PHAVU_003G222600g | ||||
Swissprot | Q8LBQ7 | 2e-57 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | V7CFN3 | 1e-168 | V7CFN3_PHAVU; Uncharacterized protein | ||||
STRING | XP_007155687.1 | 1e-169 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 4e-52 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G222600.1 |
Entrez Gene | 18635706 |
Publications ? help Back to Top | |||
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