PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G217600.2
Common NamePHAVU_003G217600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 362aa    MW: 41727.6 Da    PI: 6.9763
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G217600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.11.2e-5571361129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgk 88 
                         +ppGfrFhPtdeelv +yL+kkv++k+++l +vik+vd+yk+ePwdL++  k+ ++e+ +wyfFs++dkky+tg+r+nratk+g+Wkatg+
  Phvul.003G217600.2   7 VPPGFRFHPTDEELVGYYLRKKVASKRIDL-DVIKDVDLYKIEPWDLQElcKIGTDEQsDWYFFSHKDKKYPTGTRTNRATKAGFWKATGR 96 
                         69****************************.9***************954555554445******************************** PP

                 NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                         dk+++s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle
  Phvul.003G217600.2  97 DKAIYS-KHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                         ******.899*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-615156IPR003441NAC domain
PROSITE profilePS5100559.3517156IPR003441NAC domain
PfamPF023655.4E-298135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MNTFSHVPPG FRFHPTDEEL VGYYLRKKVA SKRIDLDVIK DVDLYKIEPW DLQELCKIGT  60
DEQSDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YSKHCLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNEN GTPPEEGWVV CRVFKKRMTT MQKVGEYDQS PCWYDEQVSF  180
MQDFESPRRI SQPYASYHQH HPCKPELMEL QYNNIPHDAF LQLPQLESPK VTHSAASLSC  240
SSVVPFGYES SNNKNNGSTL QFSSLTQEEQ IQYCHQQSQN SLYCTNDNAV DQVTDWRVLD  300
KFVASQLSHN QDVSKETSYS NAPIFHVAEQ ISVVANGSKK EQISQEYAST STSSCQIDLW  360
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-49615714169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G217600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155625.10.0hypothetical protein PHAVU_003G217600g
RefseqXP_007155626.10.0hypothetical protein PHAVU_003G217600g
SwissprotQ9FWX21e-153NAC7_ARATH; NAC domain-containing protein 7
TrEMBLV7CEB30.0V7CEB3_PHAVU; Uncharacterized protein
STRINGXP_007155625.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-156NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]