PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G213300.1
Common NamePHAVU_003G213300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TCP
Protein Properties Length: 355aa    MW: 37609.9 Da    PI: 6.8899
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G213300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1165e-36831872101
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasn 84 
                          +++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ +++ai+e+tgt++ +a ++              ssa++
  Phvul.003G213300.1  83 SPRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHSEQAIIEATGTGTVPAIAVsvggalkiP---TTSSANQ 170
                         5799************************************************************88888444444443321...2222222 PP

                 TCP  85 sssgkaaksaakskksq 101
                         +++g++ +s++k+k+++
  Phvul.003G213300.1 171 NNEGEEGASNKKRKRPS 187
                         22222222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-2988185IPR005333Transcription factor, TCP
PROSITE profilePS5136926.15789143IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MASNQEEPDM DQHQDGGKTD LGTNHADADK PSSQRTNLNG LPQHFQVLPL KNEPTDSDPD  60
PDPDPDPNAP IPPPPQMQLS LKSPRRSSTK DRHTKVEGRG RRIRIPATCA ARIFQLTREL  120
GHKSDGETVR WLLEHSEQAI IEATGTGTVP AIAVSVGGAL KIPTTSSANQ NNEGEEGASN  180
KKRKRPSNSE FVDVNDAVSQ TSGLAPVQVP QGLVPVWAVS NPSMVVPANT FWMIPQAATT  240
SNPLGGVTGP ASQRPQIWAL SPSVFNVAAR PISSLVTTTN IPEAWPVMTA CSNGSNLAAV  300
STSTVGAKVA TNSSMAPSVS SSATKTQTLR DFSLQIYDKQ ELQFLGRSGT HANP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G213300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155572.10.0hypothetical protein PHAVU_003G213300g
SwissprotO646476e-71TCP9_ARATH; Transcription factor TCP9
TrEMBLV7CF810.0V7CF81_PHAVU; Uncharacterized protein
STRINGXP_007155572.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-73TCP family protein