PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G201300.1
Common NamePHAVU_003G201300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 434aa    MW: 49519.8 Da    PI: 7.4519
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G201300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.8e-18175221148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT +Ed ll+++v q+G + W+ Ia+ ++ gR +kqc++rw+++l
  Phvul.003G201300.1 175 KGQWTSDEDRLLIQLVDQYGVRKWSHIAQALP-GRIGKQCRERWHNHL 221
                         799*****************************.*************97 PP
2Myb_DNA-binding53.94.1e-17229269345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          WT+eEd++l++a+++ G++ W+ Ia+++  gRt++++k++w+
  Phvul.003G201300.1 229 IWTEEEDKILIEAHAEIGNK-WAEIAKKLT-GRTENSIKNHWN 269
                         6*******************.********9.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.627170225IPR017930Myb domain
SuperFamilySSF466893.46E-31172268IPR009057Homeodomain-like
SMARTSM007171.9E-16174223IPR001005SANT/Myb domain
PfamPF002491.6E-16175221IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-27176227IPR009057Homeodomain-like
CDDcd001674.62E-15178221No hitNo description
SMARTSM007171.1E-15226274IPR001005SANT/Myb domain
PROSITE profilePS5129420.14226276IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-21228274IPR009057Homeodomain-like
PfamPF002491.5E-15230269IPR001005SANT/Myb domain
CDDcd001677.92E-13230272No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MHVQENCLKP SMGDELPFGA PSSQGFLQDY HHIDQFPVNN GSSSNPIFGV HTPNFDPFDH  60
NVNCESAPPD FEVFECKPIA ESNGSAHAHL MHNFQYVGYS LNLPRTNQMD MVVANQRYLP  120
FNALETKPLN FVVPDEVSCI SPPNYYKRVG LNKNLRESPT TRRTFKARKK SNIVKGQWTS  180
DEDRLLIQLV DQYGVRKWSH IAQALPGRIG KQCRERWHNH LRPDIKKDIW TEEEDKILIE  240
AHAEIGNKWA EIAKKLTGRT ENSIKNHWNA TKRRQYSKRK CRSKYPRGSL LQEYIKSLNL  300
DQNPPMDYRK KSAKNGNAKT NNNGKAAAQL LCVDQFCPNG QLVPKYDFNE VPDFCLDDNL  360
FEEGCSIDSL LDNIQSASTM EGKQSHQGGI MQRVHVDEHH ETEMRAPTMG IEVKKELDLV  420
EMISHHVNES IGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-421732752104MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-421732752104C-Myb DNA-Binding Domain
1msf_C2e-421732752104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G201300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155438.10.0hypothetical protein PHAVU_003G201300g
SwissprotQ9S7L25e-94MYB98_ARATH; Transcription factor MYB98
TrEMBLV7CB650.0V7CB65_PHAVU; Uncharacterized protein
STRINGXP_007155438.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-93myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]