PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G183700.1 | ||||||||
Common Name | PHAVU_003G183700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | TCP | ||||||||
Protein Properties | Length: 367aa MW: 40289.7 Da PI: 9.825 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 92.5 | 8.6e-29 | 54 | 194 | 3 | 112 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssasec 73 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl+ k i++l+ + Phvul.003G183700.1 54 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLNQPSKVVDWLLEVTKSDIDKLPPLqfphcftqfhqqtplsgtsqF------- 137 78*************************************************************333333333322222222220....... PP TCP 74 eaesssssasnsssg................................kaaksaakskksqksaasalnlak 112 + ++++++ ++ s++++ +++ + + Phvul.003G183700.1 138 --------------SlgslydgvnsafikdggnknlmvkstrywdidSQNRTELAESVSTSQKGKFWTKPN 194 ..............122344444444555555555556666666665222222233333333333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.3E-28 | 55 | 212 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.666 | 55 | 113 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MSGMMNESSS KVQLANQQEG ENIKTEKFSK APSTSRSWST FRNPRIVRVS RSLGGKDRHS 60 KVCTIRGLRD RRIRLSVPTA IQLYDLQDKL GLNQPSKVVD WLLEVTKSDI DKLPPLQFPH 120 CFTQFHQQTP LSGTSQFSLG SLYDGVNSAF IKDGGNKNLM VKSTRYWDID SQNRTELAES 180 VSTSQKGKFW TKPNELENHQ NGNGGSTRNR EESSAHCKLF PLGTNSSYLP GLSNNAMTHN 240 SYHHSEPSSL SLSHLGSHGL FPSHSSSGSG VQFSSSNFYG ASGPQLLFCP PSATPSAFYS 300 VETDPRQSNN VQIFSSSSQV IMPHPLIQSI HSTSSPLRRL PTSLSSKLFD SDNNDRSQQG 360 KGGTCS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-18 | 60 | 114 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-18 | 60 | 114 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G183700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007155224.1 | 0.0 | hypothetical protein PHAVU_003G183700g | ||||
Swissprot | Q9FME3 | 9e-49 | TCP5_ARATH; Transcription factor TCP5 | ||||
TrEMBL | V7CCZ4 | 0.0 | V7CCZ4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007155224.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 1e-50 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G183700.1 |
Entrez Gene | 18635312 |
Publications ? help Back to Top | |||
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