PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G182800.1 | ||||||||
Common Name | PHAVU_003G182800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 244aa MW: 27579.3 Da PI: 8.407 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 100.1 | 8.7e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss Phvul.003G182800.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 88.9 | 9.9e-30 | 88 | 172 | 16 | 100 |
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + +qe+ +Lk+++e Lqr+qR+llGedL +++ +L+qLe+qLe++lk+iRs+K++++l+q+ +l ++e l e+n+ Lr+klee Phvul.003G182800.1 88 QNYQEYLRLKARVEILQRSQRNLLGEDLAQMNTTDLEQLENQLETALKNIRSTKTQFMLDQLADLHHRETLLVETNNVLRSKLEE 172 4579******************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.782 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.7E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.39E-45 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 1.1E-33 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.66 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.7E-25 | 88 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFSST 60 SSMVKTLEKY QKYSYSALET TRPINDIQNY QEYLRLKARV EILQRSQRNL LGEDLAQMNT 120 TDLEQLENQL ETALKNIRST KTQFMLDQLA DLHHRETLLV ETNNVLRSKL EETNNSQVPV 180 SLALEAGGSN IHYTNFPPQS EGFFQAMGVN PNLQIGFNQI GPDDANVGAS SLSMHGFASG 240 WML* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 5e-25 | 86 | 170 | 17 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 5e-25 | 86 | 170 | 17 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 5e-25 | 86 | 170 | 17 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 5e-25 | 86 | 170 | 17 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G182800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093264 | 0.0 | BT093264.1 Soybean clone JCVI-FLGm-14C7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007155209.1 | 0.0 | hypothetical protein PHAVU_003G182800g | ||||
Swissprot | Q7Y040 | 1e-110 | EJ2_SOLLC; MADS-box protein EJ2 | ||||
TrEMBL | V7CCY2 | 1e-179 | V7CCY2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007155209.1 | 1e-180 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF229 | 32 | 178 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.1 | 6e-91 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G182800.1 |
Entrez Gene | 18635303 |
Publications ? help Back to Top | |||
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