PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.003G180000.1 | ||||||||
Common Name | PHAVU_003G180000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 253aa MW: 28553.8 Da PI: 9.9263 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.6 | 4.1e-15 | 91 | 140 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grW AeI++ s ++ r +lg+f+ aeeAa a++ a++ l+g Phvul.003G180000.1 91 KFLGVRQRP-SGRWIAEIKESS---QKLRLWLGTFDKAEEAALAYDCAARLLRG 140 789******.7******99932...36**********************99998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.03E-30 | 90 | 149 | No hit | No description |
SuperFamily | SSF54171 | 5.56E-19 | 91 | 148 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-27 | 91 | 149 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.4E-32 | 91 | 154 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.638 | 91 | 148 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-7 | 92 | 103 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.8E-10 | 92 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-7 | 114 | 130 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MKKENESVTV TKKVFSVSRF LFNHSVLPND GEIYKDTLTL KMLFGFKYTS KLSHQSHNPN 60 KNLPLMPIEI DKSYEKRVMK IPKVGKKIEK KFLGVRQRPS GRWIAEIKES SQKLRLWLGT 120 FDKAEEAALA YDCAARLLRG RNAKTNFPNP GTMNTHEEDY SILGKNPRSY QLLRHAVMKN 180 HALSTSLYST FMPWKNQIMT RDEHDTLVEE TVVCSIPEQG SGCCGISFGS SKVYSSVVVA 240 PSFSASSHDE TP* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.003G180000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007155177.1 | 0.0 | hypothetical protein PHAVU_003G180000g | ||||
TrEMBL | V7CE76 | 0.0 | V7CE76_PHAVU; Uncharacterized protein | ||||
STRING | XP_007155177.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12349 | 27 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 5e-15 | related to AP2 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.003G180000.1 |
Entrez Gene | 18635274 |