PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G163100.1 | ||||||||
Common Name | PHAVU_003G163100g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | C3H | ||||||||
Protein Properties | Length: 516aa MW: 58832.2 Da PI: 6.5116 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.7 | 7.1e-07 | 86 | 108 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C ff+ G+C+ Gd+C+F Hg Phvul.003G163100.1 86 MVPCYFFFN-GFCNKGDKCSFLHG 108 689******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.549 | 6 | 35 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.002 | 7 | 34 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 3.4E-11 | 7 | 61 | No hit | No description |
PROSITE profile | PS50103 | 9.845 | 37 | 63 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.97 | 39 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 83 | 108 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0011 | 83 | 109 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.103 | 83 | 110 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-4 | 86 | 108 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.1E-6 | 88 | 111 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 516 aa Download sequence Send to blast |
MDEDSLKRNT DCVYFLASPL TCKKGAECEY RHNEIARLNP RDCWYWVSGE CLNPTCAFRH 60 PPLDGHTGVP APPEPTQNSL PANKTMVPCY FFFNGFCNKG DKCSFLHGSD DSIFTGKPVK 120 NDNGSTDVHN LENKSSGNGT GVASVPTHQS LTAPKHLSDF KLQPKEDHQL QLTKNVKQQG 180 DSLVISASEY KEAAVSGSDS PFPDDGFVHN MSHLRTEQGS EEQVNSQIEP EERWESSPHS 240 PGFDVLVHDE LENIGYEEDS EYLPVLDRNE QELNEQYLGH EFKDPIEYDT MCPEADILYP 300 QETYDGYRCF DRDLAHANGR TVRTYSRDIF LDSIFSRKRI RMSAEVAAYD SNLDLRDHLR 360 RRRENNGPPR RQESSSLMIR NQERHQRPGI EQRPSGRLTS QLGYSAIDSI GEVETLSIAN 420 KHGLFRRSQQ HRPRKHYREK PVRRPFLSSK ISRKPVSKQR GFIQESTTFS APKSLAEIKE 480 EKKKAEEGLH WKSTSTDFQD PKPLSEILKD KRTLD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G163100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007154984.1 | 0.0 | hypothetical protein PHAVU_003G163100g | ||||
TrEMBL | V7CCA1 | 0.0 | V7CCA1_PHAVU; Uncharacterized protein | ||||
STRING | XP_007154984.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13092 | 18 | 23 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G163100.1 |
Entrez Gene | 18635104 |