PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G149000.1
Common NamePHAVU_003G149000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family CO-like
Protein Properties Length: 370aa    MW: 40086.8 Da    PI: 6.8914
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G149000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.31.1e-062060438
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                        + C+ ++   + lfC+ ++ +lC  C +++H        H+
  Phvul.003G149000.1 20 KPCDSCKLASAALFCRPDSAFLCIACDSKIHCAnklasrHE 60
                        68******99********************95545666665 PP
2zf-B_box26.41.5e-0862107342
            zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                          ++C+ +e+ ++   C+ +   lC +C + +H+       H++vp+
  Phvul.003G149000.1  62 VWVCEVCEQAPAAVTCKADAAALCITCDSDIHSAnplarrHDRVPV 107
                         689*****************************66899999999986 PP
3CCT69.77.3e-24297340144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Phvul.003G149000.1 297 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 340
                         9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.9541764IPR000315B-box-type zinc finger
SMARTSM003368.4E-101764IPR000315B-box-type zinc finger
PfamPF006433.3E-51961IPR000315B-box-type zinc finger
CDDcd000214.59E-72164No hitNo description
PROSITE profilePS5011910.69460107IPR000315B-box-type zinc finger
PfamPF006432.2E-661107IPR000315B-box-type zinc finger
CDDcd000217.52E-863107No hitNo description
SMARTSM003363.8E-865107IPR000315B-box-type zinc finger
PROSITE profilePS5101716.787297339IPR010402CCT domain
PfamPF062035.6E-18297339IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGIERGGLKG FRSGWTVPPK PCDSCKLASA ALFCRPDSAF LCIACDSKIH CANKLASRHE  60
RVWVCEVCEQ APAAVTCKAD AAALCITCDS DIHSANPLAR RHDRVPVEPF YDSADSIVKA  120
STAASFGFIV PSDDATGASD AFAHDDPDAA AWLIPNPNFG SKLVDATDMK SKEIFYSEMD  180
PFLDFDYSNS FHNNNSGNDS VVPVQTKPSF APPLINNHHQ SESCFDIDFC RSKLSSFNYP  240
SQSLSQSVSS SSLDVGVVPD GNTVSYSFGR NSSESSGIGL SGVSGGQGAT QLCGMDREAR  300
VLRYREKRKN RKFEKTIRYA SRKAYAETRP RIKGRFAKRT ETDSDVERLY SPGAASLMLD  360
SPYGVVPSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G149000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154800.10.0hypothetical protein PHAVU_003G149000g
SwissprotQ9FHH81e-125COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLV7C9I60.0V7C9I6_PHAVU; Uncharacterized protein
STRINGXP_007154800.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-112CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]