PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G141400.1
Common NamePHAVU_003G141400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HB-PHD
Protein Properties Length: 701aa    MW: 80220.9 Da    PI: 9.826
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G141400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.19.3e-11485529953
                         HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
            Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                         ++ +e L ++F+ n  p ++ re+L+k+lgL++++V+ WF+N R+
  Phvul.003G141400.1 485 RDSVEKLRQVFAVNELPPRSIREDLSKELGLDTEKVSKWFKNARY 529
                         678999*************************************97 PP
2PHD34.26e-12222277151
                         SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                 PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                         +C+ C+   +  +++++ C  +Ck++fH+ C++++l++e++p g  +w+C+ C++k
  Phvul.003G141400.1 222 FCAKCKVreEPPDNDVIRCYgTCKRAFHQRCVDPPLDTENVPPGrqNWFCKFCECK 277
                         699999854555*******747********************999********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.99E-12214280IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.1E-10217277IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.175220277IPR019787Zinc finger, PHD-finger
SMARTSM002497.9E-7222275IPR001965Zinc finger, PHD-type
PfamPF006282.1E-9222277IPR019787Zinc finger, PHD-finger
CDDcd155041.13E-23222274No hitNo description
PROSITE patternPS013590223274IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF466896.84E-10471533IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-10473528IPR009057Homeodomain-like
PROSITE profilePS5007111.888474534IPR001356Homeobox domain
SMARTSM003891.7E-9476538IPR001356Homeobox domain
CDDcd000863.14E-7477538No hitNo description
PfamPF000463.0E-8485529IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MRDSVKKSND KGSKKSDHLK ARTKGKKDKV KVESKSHTKN VGTDVSRKRV ISSLKIKGPR  60
KDSSDKKLIT GQKLPLKNKK SSQKPSLKLQ GKKASLSSRK EGKDADGEVK LKKMKRKRKK  120
KRQRNNLDLD DPSRLQRRTR YLLIKMKLEQ NLIDAYSGEG WKGQSREKIR PEKELQRARK  180
QILKCRLGIR DAIRQLDSLG SLSSIEDSAI APDGSGCHEH IFCAKCKVRE EPPDNDVIRC  240
YGTCKRAFHQ RCVDPPLDTE NVPPGRQNWF CKFCECKMEI LEAMNAHLGT HFSLHSAWQD  300
VFKEEAAIPD GETALLNPEE EWPSDDSEDD DYDPERKEDS PNINMEGTND SASDDLSSST  360
SLCYSDDEYS PVDGVSHEYL FVNSSIDSDE SEDKACGRRQ RKAVDYKQLY DEMFGKEAPA  420
YEQLSEDEDW GPGKRKRREK ECDAVDSLMT LHESENKHPN NEQNNMTIKY SSSTNMKRHC  480
FRIPRDSVEK LRQVFAVNEL PPRSIREDLS KELGLDTEKV SKWFKNARYL ALKNRKHQAE  540
GEANQLKRIT STKNSRLQNQ ENTDLLKSKT LKITSHSEKD VKNVSGRKKI KFSSKKRPPE  600
IPPPPGENGN KDLMEISDDV SLKKLLKKKK KRLVSFTFEG DSQTAELEFE RLCKLKQKLV  660
SMKQKLTTIQ SFRVKGSDEP HSNEPSIVYV PTAVLREKFE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111119KKMKRKRKK
2113120MKRKRKKK
3115119RKRKK
4115121RKRKKKR
5118123KKKRQR
6434439RKRREK
7625632LKKKKKRL
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G141400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154716.10.0hypothetical protein PHAVU_003G141400g
RefseqXP_007154717.10.0hypothetical protein PHAVU_003G141400g
SwissprotP487851e-145PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLV7CCV80.0V7CCV8_PHAVU; Uncharacterized protein
STRINGXP_007154716.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-144pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]