PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G135200.1
Common NamePHAVU_003G135200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HSF
Protein Properties Length: 405aa    MW: 46423.4 Da    PI: 6.1657
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G135200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.6e-35731642102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Flkk++e++ed++++ ++sws++ +sfvv+d++ef+k++LpkyFkhsnf+SFvRQLn+YgF+kv++++         weF+++ F+ gkk+
  Phvul.003G135200.1  73 FLKKTFEMVEDSHTDPVVSWSQTRDSFVVWDSHEFSKTLLPKYFKHSNFSSFVRQLNTYGFRKVDSDR---------WEFANEGFQGGKKH 154
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+++
  Phvul.003G135200.1 155 LLKNIRRRSK 164
                         *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.58E-3469162IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.9E-3869162IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-5869162IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3173162IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-187396IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-18111123IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340112136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-18124136IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MGDEMARVKA EIFDDSESDL HDDVFSESKA SGVTEDPTTV HVKEEVDDGA VNGFMDKMPK  60
TMEGLHEMGP PPFLKKTFEM VEDSHTDPVV SWSQTRDSFV VWDSHEFSKT LLPKYFKHSN  120
FSSFVRQLNT YGFRKVDSDR WEFANEGFQG GKKHLLKNIR RRSKYTRLHQ GAFTMVKPGV  180
EAEMEKLKKD QNILKVEILK LRQQQENSHV QLTNVQERVR CAEMKQYQMM FFLTRMARRP  240
AFVEQLIQKI RRKREVDGND MVKRPRLMGN PCSVPFPKTM GTTPNVDYRH QTHKQFPSMQ  300
SELEGFLSET VNISKLEHPT PSPLEDELCN SVQGLRAHGC SSANAPDASS AYHVMSEKLM  360
RENSLVDEEL DVNDSNIYLE LEDLITKPTD WSLGSTFGLV EQTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B2e-22711623105Heat shock factor protein 2
5d8l_B2e-22711623105Heat shock factor protein 2
5d8l_D2e-22711623105Heat shock factor protein 2
5d8l_F2e-22711623105Heat shock factor protein 2
5d8l_H2e-22711623105Heat shock factor protein 2
5hdk_A2e-22711628110Heat shock factor protein 2
5hdk_B2e-22711628110Heat shock factor protein 2
5hdk_C2e-22711628110Heat shock factor protein 2
5hdk_D2e-22711628110Heat shock factor protein 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G135200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154636.10.0hypothetical protein PHAVU_003G135200g
TrEMBLV7CBJ10.0V7CBJ1_PHAVU; Uncharacterized protein
STRINGXP_007154636.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-79heat shock transcription factor A2