PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G120700.1
Common NamePHAVU_003G120700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family SBP
Protein Properties Length: 1040aa    MW: 114838 Da    PI: 7.5268
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G120700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.21.3e-39157234178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +Cqv++C+adl +ak+yhrrhkvC+vhska+++lv +++qrfCqqCsrfh l+efDe++rsCrrrL++hn+rrrk+++
  Phvul.003G120700.1 157 VCQVQDCTADLGNAKDYHRRHKVCDVHSKATMALVGNVMQRFCQQCSRFHVLQEFDEGRRSCRRRLDGHNRRRRKTHP 234
                         6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.6E-31152219IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.393155232IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.54E-37156237IPR004333Transcription factor, SBP-box
PfamPF031101.7E-28158231IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.202.1E-7274297IPR020683Ankyrin repeat-containing domain
SMARTSM00248140805834IPR002110Ankyrin repeat
SuperFamilySSF484037.77E-8806923IPR020683Ankyrin repeat-containing domain
CDDcd002049.57E-8807934No hitNo description
Gene3DG3DSA:1.25.40.202.1E-7810921IPR020683Ankyrin repeat-containing domain
SMARTSM0024818861891IPR002110Ankyrin repeat
SMARTSM002484500901930IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1040 aa     Download sequence    Send to blast
MEAEFGGKNQ YLYGPVVSGM KKAVANGKRS LEWDLNDWKW DGDLFTAQPL NSVPSDCRSR  60
QFFPPHPEIP AKKTNPSNDW SSSAINPGEG NKELEKRRRG VIGEGEGEGL NDEGGSLSLN  120
LGGYGYPFMV EGEEKSRKKT KVIETTTAAA TTSNRAVCQV QDCTADLGNA KDYHRRHKVC  180
DVHSKATMAL VGNVMQRFCQ QCSRFHVLQE FDEGRRSCRR RLDGHNRRRR KTHPDVTVVN  240
EGSLKDGSGS SYLLMSLLRI LTNLHTNGSD HTRNQDILSH LLRNLASLAA PNNGRTLASL  300
LEDSKGLLNA GTPGGAYEEP NLNSNTPEAS RRPGSSIKID NGFISQDPPI SMAQCETGPT  360
NGGTQECIPS GDGGVENSKS PPGAPFSSIS QSRGSLPCQL TAVETTLRRN NLNNVDLNNV  420
YSDMQNTVEN HKKPYHHVAS QMGSIDLPSW LQCDSLKSSP PQTSRNSDST SNQSPSSSSG  480
EAQSRTDRIV FKLFGKDPND FPLLLRPQIL NWLSHSPTEI ESYIRPGCII LTIYLRLEKS  540
AWEELYCNLG SSLRRLLGES NDTFWRTGWV FARVQQSLAF LYNGQVVLDV PLCHKSPHHC  600
TISCIKPLAV PASARAHFIV KGCNLSQSST RLLCALEGKY LVHASCHDLI GGADKSIQHL  660
NFTCHIPNVT GRGFIEVEDH GLSSCSFPFI VAEKEVCSEI CKLENVIEAA ETTNDFQIKN  720
QQMEEKTQAL HFLQEMGWLL HRSRVKVRLG PVAPIHDIFQ FNRISWLVDF SMDHGWCAVM  780
KKLLDIIFEG GVDAGEHASI ELALLDMSLL HKAVMRNSRP MVELLLRFVP VKTSDAADSE  840
VKQVEKATHR FLFRPDTVGP AGLTPLHVAA SMSGSDNVLD ALIDDPGMVG IEVWKSARDS  900
TGLTPHDYAC LRGYYSYVQL VQNKTNKKGE RLHVVDIPGT VVDSGNTKQK LSDQHRTGKI  960
SSLQTEKIES TEIASECRVC QQKLAYGGIR TAVVYRPVLL SMVAIAAVCV CVALLFKSSP  1020
RVYYVFQPFN WESLEYGTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-291572311084squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G120700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154455.10.0hypothetical protein PHAVU_003G120700g
TrEMBLV7C8H90.0V7C8H9_PHAVU; Uncharacterized protein
STRINGXP_007154455.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.11e-178squamosa promoter binding protein-like 1