PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G111900.1
Common NamePHAVU_003G111900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family CAMTA
Protein Properties Length: 923aa    MW: 104781 Da    PI: 7.2133
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G111900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1164.12.4e-51301453117
                CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         +e ++rwl+++ei+a+L n++ + +  ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++np
  Phvul.003G111900.1  30 EEaRTRWLRPNEIHAMLCNYKYFPINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNP 120
                         4559*************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhylev 117
                         +f rrcywlL++++e+ivlvhy+e 
  Phvul.003G111900.1 121 NFVRRCYWLLDKSMEHIVLVHYREI 145
                         **********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.73325151IPR005559CG-1 DNA-binding domain
SMARTSM010762.8E-7428146IPR005559CG-1 DNA-binding domain
PfamPF038591.0E-4531144IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.100.001358455IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.68E-15368455IPR014756Immunoglobulin E-set
SuperFamilySSF484033.26E-19551667IPR020683Ankyrin repeat-containing domain
CDDcd002044.28E-16553663No hitNo description
Gene3DG3DSA:1.25.40.201.3E-17553666IPR020683Ankyrin repeat-containing domain
PfamPF127963.9E-7553633IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.175571663IPR020683Ankyrin repeat-containing domain
SMARTSM002487.3E-5604633IPR002110Ankyrin repeat
PROSITE profilePS5008810.82604636IPR002110Ankyrin repeat
SMARTSM00248900643674IPR002110Ankyrin repeat
SuperFamilySSF525402.34E-10654819IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000157.7767789IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.108768797IPR000048IQ motif, EF-hand binding site
PfamPF006120.036771788IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0099790812IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.48791819IPR000048IQ motif, EF-hand binding site
PfamPF006120.012792812IPR000048IQ motif, EF-hand binding site
SMARTSM0001511871893IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.206873901IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 923 aa     Download sequence    Send to blast
MANNLAAQLV GSEIHGFHTL QDLDVRSIME EARTRWLRPN EIHAMLCNYK YFPINVKPVN  60
LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDNP  120
NFVRRCYWLL DKSMEHIVLV HYREIQEMQG SPVTPVNSHS SSVSDPPAPW AVLEEIDSGT  180
TTTYAGDMSD NVKDKSHELR LHEINTLEWD DLVDANDHDA STMPNGDTVP YFNQQDQTLL  240
NDSFSNVVNN PSGEISSFNC LPQPIAGTNS VTYNFSESAK LQMMGNQANP NEQRNNIGSL  300
SAGSLDPLVN DRLQSQGSFG MWVNHMMSDS SCSVDDPALE SPVSSVHESY LSLGVDGQQF  360
CQPEQVFTIT DVSPTWVSST ETSKVLVTGF FHKDYMHLSK SNLLCVCGDV SVPAEIVQVG  420
FYRCWVPPHS PGIVNLFLSF DGHKPISQVV NFEYRTLVLH DPTAAMEENS NWDEFRLQMR  480
LSYLLFNKQL SLDVISCKVS PNRLKEARQF ALRTSFISNS WQYLIKSTED HQIPFSEAKD  540
ALFGIALKNR LREWLLERIV LGYKTTEYDS HGQSVIHLCA ILGYTWAVSL FSWSGLSLDF  600
RDRFGWTALH WAAYCGREKM VAALLSAGAK SNLVTDPTQK NPSGCTAADL AYMKGHDGLA  660
AYLSEKSLVQ QFNDMSLAGN ISGTLENNTT DAINSANLTD DQQNLRDTLA AYRTAADAAA  720
RIQTAFREHN LKLRTNAVMS SNPEAEARKI VAAMKIQHAF RNFETKKMMG AAARIQCTFR  780
TWKIRKEFLL MRRQAVKIQA AFRCFQLRKH YRQILWSVSV VEKAVLRWRL KRRGFRGLQV  840
RTVEVGTGDQ DKESVVEEEF FQTGRRQAEE RVERSVVRVQ AMFRSKKAQE EYRRMKLALD  900
QAKLDREFEE LLSTEVDMEL KA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G111900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154355.10.0hypothetical protein PHAVU_003G111900g
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLV7C8940.0V7C894_PHAVU; Uncharacterized protein
STRINGXP_007154355.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42883459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]