PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G111800.1 | ||||||||
Common Name | PHAVU_003G111800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | RAV | ||||||||
Protein Properties | Length: 388aa MW: 42253.5 Da PI: 9.1283 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.7 | 7.1e-14 | 72 | 120 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g Phvul.003G111800.1 72 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAAQRFRG 120 89****9888.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 98.9 | 3.1e-31 | 204 | 308 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+ tpsdv+k++rlv+pk++ae+h + ++++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F Phvul.003G111800.1 204 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqsvngvSATAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCF 294 89***************************9998886666799************************************************* PP EE-SSSEE..EEEE CS B3 83 kldgrsefelvvkv 96 +++ +++l++ + Phvul.003G111800.1 295 HRSTGPDKQLYIDW 308 *8766777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.33E-17 | 72 | 128 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.07E-26 | 72 | 130 | No hit | No description |
Pfam | PF00847 | 8.9E-9 | 72 | 120 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.152 | 73 | 128 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-20 | 73 | 128 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-29 | 73 | 134 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 8.3E-40 | 199 | 313 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-30 | 202 | 307 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.05E-28 | 203 | 297 | No hit | No description |
SMART | SM01019 | 4.4E-25 | 204 | 312 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-28 | 204 | 309 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.521 | 204 | 312 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MDCMDESTTT ESLSISLSPT ISSEDKLVPP SKNLSPPPPS NTLCRVGSGA SAIVDPDGAG 60 NTEAESRKLP SSKYKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEDEAARA YDIAAQRFRG 120 KDAVTNFKPV SGGDGDDDDG EAEFLNSHSK SEIVDMLRKH TYNDELEQSK RSRGVVRRRG 180 GAAGAGTGNS ISGACFVKAR EQLFEKAVTP SDVGKLNRLV IPKQHAEKHF PLQSVNGVSA 240 TAAKGVLLNF EDVGGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLKAGD TVCFHRSTGP 300 DKQLYIDWKA RNNSVNEVGL FGPVGPVVEP IQMVRLFGVN ILKLPGSEAN NNNNASATIP 360 GFCNGKRREM ELFSLECSKK PKIIGAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 5e-58 | 201 | 314 | 11 | 120 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00024 | PBM | Transfer from AT1G25560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G111800.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007154354.1 | 0.0 | hypothetical protein PHAVU_003G111800g | ||||
Swissprot | Q9C6M5 | 1e-144 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | V7CAG4 | 0.0 | V7CAG4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007154354.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2920 | 32 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 1e-132 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G111800.1 |
Entrez Gene | 18634575 |