PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G102600.1
Common NamePHAVU_003G102600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 484aa    MW: 50645.7 Da    PI: 8.362
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G102600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.57.9e-124873227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        +++ C +++rtG+C yG rC+F+H++
  Phvul.003G102600.1 48 DEADCIYYLRTGFCGYGTRCRFNHPR 73
                        6799********************96 PP
2zf-CCCH37.92.9e-1295119327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C++++rtG Ck+G++Ck++H++
  Phvul.003G102600.1  95 QPVCQYYMRTGSCKFGASCKYHHPR 119
                         689********************96 PP
3zf-CCCH35.12.3e-11141165327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C+++ +tG+Ck+G++CkF+H++
  Phvul.003G102600.1 141 EKECSYYVKTGQCKFGATCKFHHPQ 165
                         679********************97 PP
4zf-CCCH37.73.4e-12306331227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C+++++tG+Ck+G++C+++H+p
  Phvul.003G102600.1 306 DQPECHYYMKTGECKFGPSCRYHHPP 331
                         689*********************97 PP
5zf-CCCH29.31.4e-09354377427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          +C ++ + G Ck+G+ CkF H++
  Phvul.003G102600.1 354 QPCTHYTQRGVCKFGSACKFDHPM 377
                         69********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-44673IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8544674IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-94873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-64975IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-55273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.77992120IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-792119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-695120IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-1095119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-597119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324138166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6139166IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-5140165IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-9141165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4144164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.577304332IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5304331IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9306331IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6307332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-4310330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.436350378IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5350377IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6353380IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5354375IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-7354377IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MERYGRASEG SQSDPSPEWT VAGADAGIEE SSWQLGLAAA ESYPLRPDEA DCIYYLRTGF  60
CGYGTRCRFN HPRDRAAVIG AAARTGGEFP ERVGQPVCQY YMRTGSCKFG ASCKYHHPRQ  120
AAGTATPVPL NYYGYPLRVG EKECSYYVKT GQCKFGATCK FHHPQPAGVQ VIAPSPVPSV  180
SHLPVPVPSP VYPTVQPQSG PSQQQYGVLV ARPPMLPGSV VQGPYGPMVV SPAMVPFSGW  240
GPYQAPATTP VIPSSTASNV GSTQLYGITP LPSSAATYTG PYQSSGSSIG PSGAIQKEHP  300
FPERPDQPEC HYYMKTGECK FGPSCRYHHP PDKGAPKANV ILSPVGLPLR PGAQPCTHYT  360
QRGVCKFGSA CKFDHPMGSL SYSPSASSLA DMPVAPYPVG SSIGTLAPSS SSSELRPELG  420
AGVSKESVSS RMSSMSTSTG SVGLTLSSVG HISHSSTQPS AQSSSSSATT SATTSSTVSH  480
TSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G102600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154244.10.0hypothetical protein PHAVU_003G102600g
RefseqXP_007154245.10.0hypothetical protein PHAVU_003G102600g
SwissprotQ6NPN31e-161C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLV7C7Z40.0V7C7Z4_PHAVU; Uncharacterized protein
STRINGXP_007154244.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-140C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]