PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G102500.1 | ||||||||
Common Name | PHAVU_003G102500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 351aa MW: 38898.7 Da PI: 5.7717 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.9 | 1e-17 | 48 | 96 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta+eAa a+++a+++++g Phvul.003G102500.1 48 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 96 56******.**********965...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.587 | 47 | 104 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.97E-28 | 47 | 103 | No hit | No description |
SMART | SM00380 | 7.3E-33 | 47 | 110 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-20 | 48 | 105 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-28 | 48 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-7 | 48 | 59 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-11 | 50 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-7 | 70 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010102 | Biological Process | lateral root morphogenesis | ||||
GO:0010432 | Biological Process | bract development | ||||
GO:0010451 | Biological Process | floral meristem growth | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MSTSRTSDTP FKGYDPTQTQ MCLSLLQRNT SPCGERRGRR KQAEPGRFLG VRRRPWGRYA 60 AEIRDPTTKE RHWLGTFDTA QEAALAYDRA ALSMKGSQAR TNFVYSDNIN FHTILSPADV 120 QVQVQVQPLL PPSQFLTNTT HTKQPNHQNT LPKVIHTSNG GNPSPLNNID VCVETTYGSA 180 QDDSYFFSSD SNSGYLECIV PDNCFRPASS STNSSNSRKS NVSDQKANAN SIESTNHHHY 240 SHVDMTSFSQ EGMEMAPMAS NFSDFWYPSE LSQGSWDDQQ SWDWNSSELS AIFKNPLRVE 300 NGCMDALYPI TDHSPSPSPS YGLMNEAASS TTCSPSLPPF GDVDLGYPLF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-20 | 38 | 110 | 5 | 78 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00520 | DAP | Transfer from AT5G18560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G102500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007154243.1 | 0.0 | hypothetical protein PHAVU_003G102500g | ||||
TrEMBL | V7C7U9 | 0.0 | V7C7U9_PHAVU; Uncharacterized protein | ||||
STRING | XP_007154243.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5784 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18560.1 | 1e-53 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G102500.1 |
Entrez Gene | 18634480 |