PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G085000.1
Common NamePHAVU_003G085000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 550aa    MW: 61208.9 Da    PI: 6.2785
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G085000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS406.32.9e-1241855498374
                GRAS   8 cAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                         cA+avs++d   a+  + + l +++s +gdp+qRl +y++e+L+arl +s++ +yk+l++++ +   s+e +++++++++++P+ kf+++ 
  Phvul.003G085000.1 185 CAQAVSDDDIPTARGWMDNvLGKMVSVSGDPIQRLGSYLLEGLRARLESSGDLIYKSLKCEQPT---SKELMSYMHILYQICPYWKFAYIS 272
                         ***************997627888***************************************9...99999******************* PP

                GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                         aN  Ilea+++e+r+Hi Df+i qG QW  L+qaLa Rp+gppslR+Tgv++++s+  +   le +ge L++fA+++gvpfef+  +a + 
  Phvul.003G085000.1 273 ANAVILEAMANESRIHIMDFQIAQGRQWYLLIQALAHRPGGPPSLRVTGVDDSQSFhaRGGGLEIVGESLSEFARSCGVPFEFHS-AAMSG 362
                         ****************************************************9999889999***********************.66677 PP

                GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                          ++   + +++pgEalaVn+ + lh+l desvs+e++rd++L+lvkslsPkvv++veqe+++n+++F+ rfle+l+yy+a+f+s+++  pr
  Phvul.003G085000.1 363 CEVVRGNVEIRPGEALAVNFPFVLHHLADESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFSRFLETLDYYTAMFESIDVACPR 453
                         777799************************************************************************************* PP

                GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                         ++++ri+ E+++++r+ivn++aceg er+erhe l+kWr+rl++aGFk+ +ls++++   + ll+ ++++ yr+e+++++l+lgW++r + 
  Phvul.003G085000.1 454 DDKKRISAEQHCVARDIVNMIACEGVERVERHELLGKWRSRLSMAGFKQCQLSSSVMVATQNLLNDFSQN-YRLEHRDDALYLGWMNRHMA 543
                         ********************************************************************66.******************** PP

                GRAS 369 svSaWr 374
                         + SaWr
  Phvul.003G085000.1 544 TSSAWR 549
                         *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.955152530IPR005202Transcription factor GRAS
PfamPF035149.9E-122185549IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MQTSQKHPSS AGVHFYHHQP VRGIYQVLKS DLCHDGRDSS SQGTSVSFET CKQQYFTLES  60
CPAPTTGFLD CDDSPSYASV SSKRSPFSPQ GSQSCYSDHH PSSDNTYGSP ISGLSSVDDG  120
HELKHKLREL EISLLGPEEL DIVDSFGCCA KGSRLYGASQ LAKHNWDDIA DNISGFDLKG  180
VFRLCAQAVS DDDIPTARGW MDNVLGKMVS VSGDPIQRLG SYLLEGLRAR LESSGDLIYK  240
SLKCEQPTSK ELMSYMHILY QICPYWKFAY ISANAVILEA MANESRIHIM DFQIAQGRQW  300
YLLIQALAHR PGGPPSLRVT GVDDSQSFHA RGGGLEIVGE SLSEFARSCG VPFEFHSAAM  360
SGCEVVRGNV EIRPGEALAV NFPFVLHHLA DESVSTENHR DRLLRLVKSL SPKVVTLVEQ  420
ESNTNTSPFF SRFLETLDYY TAMFESIDVA CPRDDKKRIS AEQHCVARDI VNMIACEGVE  480
RVERHELLGK WRSRLSMAGF KQCQLSSSVM VATQNLLNDF SQNYRLEHRD DALYLGWMNR  540
HMATSSAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-5621254936375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G085000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154029.10.0hypothetical protein PHAVU_003G085000g
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLV7C9J60.0V7C9J6_PHAVU; Uncharacterized protein
STRINGXP_007154029.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13