PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G073700.1 | ||||||||
Common Name | PHAVU_003G073700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | VOZ | ||||||||
Protein Properties | Length: 519aa MW: 57656.8 Da PI: 6.0324 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 441.8 | 8.3e-136 | 242 | 458 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwn 91 pppsaflgpkc+lwdc+rpaqg +w+qdycssfha+lalneg+pg++pvlrp+gi+lkd+llfaalsa++qgk+vgipecegaatakspwn Phvul.003G073700.1 242 PPPSAFLGPKCSLWDCPRPAQGLDWCQDYCSSFHAALALNEGPPGMSPVLRPGGIGLKDSLLFAALSARAQGKDVGIPECEGAATAKSPWN 332 89***************************************************************************************** PP VOZ 92 aaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalal 182 a+elfdl++legetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvm+efgglkrsyymdpqp+++fewhlyeyei+++da+al Phvul.003G073700.1 333 APELFDLTVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEISKCDACAL 423 ******************************************************************************************* PP VOZ 183 yrlelklvdekksakgkvskdsladlqkklgrlta 217 yrlelklvd+kk++k+k+++ds+adlqk++grl+a Phvul.003G073700.1 424 YRLELKLVDGKKNSKTKLANDSVADLQKQMGRLSA 458 *********************************97 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MQFTFWVFDL LLNIDLGRFC LGACSNCFFS FSAKLGTSGF AMKKVPKNSC KSASHRLFKD 60 KAKNRVDDLQ VMFLDLQYAR KESRTVDAAV LEEQVHQMLR EWKAELNEPS PASSLQQGGS 120 LGSFSTDICR LLQLCDEEDD ASSPLAAPKS EPNDQTLQAG GKVMFQEGQQ QHDFPLIDEC 180 KNSTSSVQNV AANNPDGHAL EYHQFDLHQD YDHGFYTGFN GTGYCEEDAI PHISSYLPSI 240 CPPPSAFLGP KCSLWDCPRP AQGLDWCQDY CSSFHAALAL NEGPPGMSPV LRPGGIGLKD 300 SLLFAALSAR AQGKDVGIPE CEGAATAKSP WNAPELFDLT VLEGETIREW LFFDKPRRAF 360 ESGNRKQRSL PDYSGRGWHE SRKQVMNEFG GLKRSYYMDP QPLNHFEWHL YEYEISKCDA 420 CALYRLELKL VDGKKNSKTK LANDSVADLQ KQMGRLSAEF PHDNKRAAKG RAKVNAKVGI 480 GGVYSASHRV TTLNGAYEYG LAAPYDYLVE NMGDYYGT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G073700.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007153891.1 | 0.0 | hypothetical protein PHAVU_003G073700g | ||||
Swissprot | Q9SGQ0 | 0.0 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | V7C9D6 | 0.0 | V7C9D6_PHAVU; Uncharacterized protein | ||||
STRING | XP_007153891.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1498 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 0.0 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G073700.1 |
Entrez Gene | 18634177 |
Publications ? help Back to Top | |||
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