PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G064800.1 | ||||||||
Common Name | PHAVU_003G064800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 365aa MW: 40165.7 Da PI: 7.1374 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.8 | 2.3e-17 | 45 | 94 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g Phvul.003G064800.1 45 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 94 59*******.**********93....35999**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.089 | 45 | 102 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-29 | 45 | 101 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.4E-33 | 45 | 108 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.1E-11 | 45 | 94 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.57E-30 | 45 | 101 | No hit | No description |
SuperFamily | SSF54171 | 4.38E-21 | 45 | 102 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.0E-9 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-9 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MEEALRRLNG VTPSQEPDLV SDPHPKKCAA KRTLRDTANS GTAMRYRGVR RRPWGRYAAE 60 IRDPQSKERR WLGTFDTAEE AACAYDCAAR AMRGVKARTN FVYPDAADPH LFHPFNLPKH 120 CHVSRFPHNT NLGSDFPASS HHSASSSSSS LNMLLFRDFL NSSSNPCLLS SAPSQQFHNN 180 KSASCYVNSS SPSLSSSTAT NCLQGCCVGN ANSYNNAVSA NHGAEVAEVI DEDSDFFLRE 240 SSDSGLLEEI VHKFLPKSKP KVETSTVAQS FPESVPQPIF DHVVVSASKG YADSRMRVPK 300 VDGFGVCYDS PMQQFEALSG FNAMQGMSSI QRDNQFMMNH IAGFSGIEDY LQYPELFNSF 360 ATRM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-19 | 45 | 101 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G064800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007153786.1 | 0.0 | hypothetical protein PHAVU_003G064800g | ||||
TrEMBL | V7C930 | 0.0 | V7C930_PHAVU; Uncharacterized protein | ||||
STRING | XP_007153786.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4100 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12980.1 | 2e-13 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G064800.1 |
Entrez Gene | 18634082 |