PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G058800.1
Common NamePHAVU_003G058800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 271aa    MW: 29321.3 Da    PI: 8.0523
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G058800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-1180126354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+ErrRR+riN  + +Lr l+P+      +K++Ka+ L +++  +k+L
  Phvul.003G058800.1  80 KNHSEAERRRRERINGHLTTLRGLVPST-----EKMDKATLLAEVISQVKEL 126
                         58*************************8.....8**********99988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.38377126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-980126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-1381129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-1381128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-1183132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MVYSFYDKSS SSGSGSDTSG LFNPTLRSLG ASNGDVVKGG LSSSHSLVYE SEKGELVKYS  60
SAARVGKNEI CEAKALAALK NHSEAERRRR ERINGHLTTL RGLVPSTEKM DKATLLAEVI  120
SQVKELKKTA VEASKGFLIP MDADEVKVEP CDGSKSYSAT ICCDFRPEII SDLRQTLDSL  180
PLHLEKAEIS TLAGRMKNVF VFTCCKGNIN IDTEECQALA RTVHQALSSV LDKASASLEF  240
SPRTSHANKR RRLCFIETST SSCNHGSCLC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18590ERRRRE
2248252KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G058800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311110.0KT031111.1 Glycine max clone HN_CCL_47 bHLH transcription factor (Glyma07g32690.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153714.10.0hypothetical protein PHAVU_003G058800g
TrEMBLV7C8N70.0V7C8N7_PHAVU; Uncharacterized protein
STRINGXP_007153714.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-32bHLH family protein