PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G046200.1
Common NamePHAVU_003G046200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 296aa    MW: 33602.5 Da    PI: 9.2827
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G046200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding621.2e-191461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rgrWT+eEd++l+d+v ++G ++W++++++ g+ R++k+c++rw +yl
  Phvul.003G046200.1 14 RGRWTPEEDKKLLDYVGKHGHRNWRLVPAKAGLERCGKSCRLRWINYL 61
                        8*********************************************97 PP
2Myb_DNA-binding513.4e-1667110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++teEd  +++++++lG++ W+ Ia++++  Rt++++k++w +
  Phvul.003G046200.1  67 RGNFSTEEDHTIIQLHALLGNK-WSIIAAHLP-QRTDNEIKNYWKT 110
                         89********************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.236965IPR017930Myb domain
SuperFamilySSF466894.69E-3112108IPR009057Homeodomain-like
SMARTSM007174.2E-151363IPR001005SANT/Myb domain
PfamPF002491.2E-171461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-251568IPR009057Homeodomain-like
CDDcd001671.68E-111661No hitNo description
PROSITE profilePS5129420.12966116IPR017930Myb domain
SMARTSM007172.6E-1366114IPR001005SANT/Myb domain
PfamPF002497.0E-1567110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2569117IPR009057Homeodomain-like
CDDcd001671.34E-869112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGRKACCENL ELKRGRWTPE EDKKLLDYVG KHGHRNWRLV PAKAGLERCG KSCRLRWINY  60
LKPDIKRGNF STEEDHTIIQ LHALLGNKWS IIAAHLPQRT DNEIKNYWKT NIKKRLIRMG  120
LDPITITHKT IKQNTFECCG DGKDQSKDTI NIRHVAQWER ARLEAEARGS MLQVGSGSSN  180
LSRLILSKIP TQPCLSSHSV STEHKRVHNM YALVLTTNHD FRSSVSTLSI PKLPAVSNIP  240
QITNTESLLT YKADNNVMEG CVSNLQDDDI MLAVEAFRTA RSESIEELLN EFISM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26111164108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G046200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-150AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153564.10.0hypothetical protein PHAVU_003G046200g
SwissprotQ9LE638e-76MY106_ARATH; Transcription factor MYB106
TrEMBLV7C8590.0V7C859_PHAVU; Uncharacterized protein
STRINGXP_007153564.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13536826
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-75myb domain protein 16