PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G039200.1 | ||||||||
Common Name | PHAVU_003G039200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 243aa MW: 27963.8 Da PI: 8.3086 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.9 | 3.6e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g++KKA+E+SvLCdaeva+i+fs++gkl+ey++ Phvul.003G039200.1 9 KRIENKINRQVTFSKRRGGLFKKANEISVLCDAEVALIVFSHKGKLFEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 97.6 | 1.8e-32 | 77 | 174 | 3 | 100 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 +++ ++++++ +++ e+++Lk++i+ Lqr+ R ++GedL s+slkeLq+LeqqL++s+k+iR+++n+l++e+i+elqkkek +qe+n Phvul.003G039200.1 77 ERQLLGNDSETQGNWTIEYSRLKAKIDLLQRNYRPYMGEDLASMSLKELQSLEQQLDTSVKNIRTRRNDLIHESISELQKKEKWIQEQNSI 167 5566667788899****************************************************************************** PP K-box 94 Lrkklee 100 L +k++e Phvul.003G039200.1 168 LANKIKE 174 ****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.427 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.62E-38 | 2 | 79 | No hit | No description |
SuperFamily | SSF55455 | 2.49E-32 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.3E-27 | 85 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.643 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGRSRVQLKR IENKINRQVT FSKRRGGLFK KANEISVLCD AEVALIVFSH KGKLFEYATD 60 SCMEKILERH ERYAYAERQL LGNDSETQGN WTIEYSRLKA KIDLLQRNYR PYMGEDLASM 120 SLKELQSLEQ QLDTSVKNIR TRRNDLIHES ISELQKKEKW IQEQNSILAN KIKEKEEAVA 180 QHAVQWEQTN YKVDTSFLPQ QQPLPSLNIG GSSFNQEAAP EIGRNGLDLT LEPLFSCHLG 240 CF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 4e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 4e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 4e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 4e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00096 | ChIP-seq | Transfer from AT1G69120 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G039200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095362 | 1e-179 | BT095362.1 Soybean clone JCVI-FLGm-14L12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007153481.1 | 0.0 | hypothetical protein PHAVU_003G039200g | ||||
Swissprot | Q6E6S7 | 1e-116 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | V7C874 | 1e-180 | V7C874_PHAVU; Uncharacterized protein | ||||
STRING | XP_007153481.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF588 | 32 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 3e-99 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G039200.1 |
Entrez Gene | 18633818 |
Publications ? help Back to Top | |||
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