PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G036000.1 | ||||||||
Common Name | PHAVU_003G036000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | CO-like | ||||||||
Protein Properties | Length: 385aa MW: 43360.1 Da PI: 8.5382 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 27.5 | 6.3e-09 | 16 | 59 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 +r C+ + +++++++C ++ +lC+ C ++ H+ H+v Phvul.003G036000.1 16 ARACDSCIRNRARWYCAADDAFLCQACDSSVHSAnplarrhHRV 59 578*****************************668888886655 PP | |||||||
2 | CCT | 67.2 | 4.6e-23 | 323 | 366 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr++R+F+KkirYe+RK +Ae+RpR+KGrFvk++ Phvul.003G036000.1 323 REARVSRYREKRRKRLFSKKIRYEVRKLNAEKRPRMKGRFVKRP 366 9*****************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.722 | 14 | 61 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.2E-9 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.2E-7 | 16 | 58 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.33E-9 | 17 | 61 | No hit | No description |
PROSITE profile | PS51017 | 16.013 | 323 | 365 | IPR010402 | CCT domain |
Pfam | PF06203 | 9.3E-18 | 323 | 365 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MSSTKNKGNA VGAKTARACD SCIRNRARWY CAADDAFLCQ ACDSSVHSAN PLARRHHRVR 60 LKIVSHIEAN KKSFSGTGNG PSWHKGFTKK PRTPRHGKNG NKALKNPFDV VPEDTNSNSH 120 EESVDEVLYR VPATPSAEQG VSVSDERRVD LLGCESAFEI AFSADVESLL REGLESECVG 180 MEELGLVGTD EVEEHASWEC CVGGGNMKVE EEAYELGFDC GHELNFSLTC EEVKEKVIGL 240 DKRQEVVKED DQRKKKKILL LRLDYEAVIT AWTSQRSLWT TSHKPDLGTT QFWPHCMRTC 300 GVEFEHRSGE LFGCDAAMAD GGREARVSRY REKRRKRLFS KKIRYEVRKL NAEKRPRMKG 360 RFVKRPSLAT PPIFPLLNKK EERV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 334 | 349 | RKRLFSKKIRYEVRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G036000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007153446.1 | 0.0 | hypothetical protein PHAVU_003G036000g | ||||
TrEMBL | V7C840 | 0.0 | V7C840_PHAVU; Uncharacterized protein | ||||
STRING | XP_007153446.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 8e-66 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G036000.1 |
Entrez Gene | 18633785 |