PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G035900.1 | ||||||||
Common Name | PHAVU_003G035900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | LBD | ||||||||
Protein Properties | Length: 220aa MW: 24001.7 Da PI: 8.303 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.8 | 1.9e-29 | 4 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C++lr++C++dCv++p++ ++q++++ ++ k++G++ +l+l++a+p+++r+d+++sl+yeA+ r+ +P G+vg+++++++ Phvul.003G035900.1 4 SCNGCRILRKGCTEDCVIRPCLewinsSEAQANATLFLSKFYGRAGLLNLINAAPQHHRTDVFKSLMYEACGRIMNPTFGSVGLFWSGEWA 94 6*********************9998777889*********************************************************** PP DUF260 87 leqlkaelallkee 100 +q++++++l++++ Phvul.003G035900.1 95 QCQAAVDAVLAGSQ 108 *******9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.483 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.7E-24 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MKISCNGCRI LRKGCTEDCV IRPCLEWINS SEAQANATLF LSKFYGRAGL LNLINAAPQH 60 HRTDVFKSLM YEACGRIMNP TFGSVGLFWS GEWAQCQAAV DAVLAGSQIN VMTTSHSQVM 120 VAHGSEHASK LLDIRHVVKD ANMDKVKGKS KKPNRTENVM MPMSHVGLVN SATLWNPILS 180 HEPRRLEGGG EEIVRAMLLS QDKPSINGGN NIDLELTLG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G035900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 2e-77 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007153445.1 | 1e-164 | hypothetical protein PHAVU_003G035900g | ||||
TrEMBL | V7C5M2 | 1e-163 | V7C5M2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007153445.1 | 1e-164 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 2e-65 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G035900.1 |
Entrez Gene | 18633784 |