PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G035500.1
Common NamePHAVU_003G035500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 361aa    MW: 39370.5 Da    PI: 4.4509
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G035500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.6e-18109157254
                 AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                         +ykGVr +k +g+W+AeIrd +     + +r++lg++ taeeA +a++  r+++e
  Phvul.003G035500.1 109 KYKGVRMRK-WGKWAAEIRDpF-----KgARVWLGTYNTAEEASQAYESKRLEFE 157
                         8******99.**********55.....45**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.54E-22109156No hitNo description
PROSITE profilePS5103219.414109166IPR001471AP2/ERF domain
PfamPF008478.6E-12109158IPR001471AP2/ERF domain
SMARTSM003801.4E-18109170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-21109157IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-16109156IPR016177DNA-binding domain
PRINTSPR003672.0E-9110121IPR001471AP2/ERF domain
PRINTSPR003672.0E-9132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MLEALNQSAK TMKKLKQKRN PFHDSKMARK LRIICDDPDA TDSSSDEEEH FGKGRKVRRT  60
VVDIALPPVP VNSVIAAAET STQSSNNGEL NKKMVLAKTP SSKRPSAGKY KGVRMRKWGK  120
WAAEIRDPFK GARVWLGTYN TAEEASQAYE SKRLEFETMA KTLSNSRSNS TSNNKNTDSS  180
NNVVASVVTV AAPENNNNSN YCVSSAAHSV SDSKSATIDY SDSSILSHTS PYSVLELETS  240
ASKLTESGKV SGSEVVETED LFTEFAELDI PDLSMLSVPP PSAVAAVPSE FKFDWLALDG  300
LEHGLDQEFG FDEDLGDLED IKICGFDDSE PSELPDFDFD DFGADEFAGW IEEPPNIPSV  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-121081641370Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G035500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153441.10.0hypothetical protein PHAVU_003G035500g
TrEMBLV7C8350.0V7C835_PHAVU; Uncharacterized protein
STRINGXP_007153441.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-29ERF family protein