PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G028000.1 | ||||||||
Common Name | PHAVU_003G028000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | G2-like | ||||||||
Protein Properties | Length: 374aa MW: 41398.1 Da PI: 6.7998 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.3 | 1.3e-31 | 212 | 267 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rF++a++qLGG++ AtPk+i+elmkv+gLt+++vkSHLQk+Rl+ Phvul.003G028000.1 212 KQRRCWSQELHKRFLHALQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLH 267 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-28 | 209 | 270 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.783 | 209 | 269 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.63E-18 | 210 | 270 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.1E-27 | 212 | 267 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-6 | 214 | 264 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MLPLKMGFRE YIEALEEERR KIQVFPKELP LSLELVTQAI EGCRQQLSGT VTEYNLNGQS 60 ECSEQTSTDE GPVFEEFIPI KKMASQDSVE EEEEEENEDE VEDEQHSHQH RKTTSDKRKS 120 DWLRSVQLWN PNPPPTKEDV PRKANVVEVK RNGGAFQPFQ REEKSGVVDG KVNNYASAIG 180 KAPSSPPVPA TSSTGPVRID SKKEEKGQAQ RKQRRCWSQE LHKRFLHALQ QLGGADSATP 240 KQIRELMKVD GLTNDEVKSH LQKFRLHTRR SPIMHNNASS QAAPLFLVGN IFVQPPEYGA 300 VATSSASGGE LTTVTAPTGI YAPVAAHPPP VTNTPIMKHL HSQERPHNHH SAQSNSPASS 360 SSTHTITTTS CAP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G028000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031180 | 0.0 | KT031180.1 Glycine max clone HN_CCL_160 MYB/HD-like transcription factor (Glyma02g10940.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007153350.1 | 0.0 | hypothetical protein PHAVU_003G028000g | ||||
TrEMBL | V7C5E6 | 0.0 | V7C5E6_PHAVU; Uncharacterized protein | ||||
STRING | XP_007153350.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3918 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25550.1 | 2e-79 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G028000.1 |
Entrez Gene | 18633702 |