PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G027900.1
Common NamePHAVU_003G027900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 309aa    MW: 34489.3 Da    PI: 7.09
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G027900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.6e-05125144120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++C+ C+k+F+r  n++ H+
  Phvul.003G027900.1 125 FSCTVCNKMFNRFNNMQMHM 144
                         89*****************9 PP
2zf-C2H213.80.00017210232123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C +Cgk+F  + + ++H +++
  Phvul.003G027900.1 210 FGCRKCGKPFAVRGDWRTHEKNC 232
                         56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.67E-5121146No hitNo description
PROSITE profilePS501579.889125152IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-5125144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
SuperFamilySSF576671.37E-5193230No hitNo description
Gene3DG3DSA:3.30.160.607.3E-5196230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MQTHPFSYIP SCHGSSAFLE PHHHQEAVDE ASISLSLGPP GQQHHPKGTS SSSSSSTLHH  60
YRHNPTSDDQ RGVTVALHIG LPNPTTSPNS PTPISKPDLH LTSTPIQGQY WIPSPAQILI  120
GPTQFSCTVC NKMFNRFNNM QMHMWGHGSQ YRKGPESLRG AKPASSMLRL PCYCCAEGCK  180
NNIDHPRSRP LKDFRTLQTH YKRKHGAKPF GCRKCGKPFA VRGDWRTHEK NCGKLWFCIC  240
GSDFKHKRSL KDHVRAFGDG HAPHTVESCD QIGEDDLFGD EDEEELDVED DDDDDEGYNS  300
NQVVFSFN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G027900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153349.10.0hypothetical protein PHAVU_003G027900g
SwissprotQ9FX681e-121ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLV7C7J40.0V7C7J4_PHAVU; Uncharacterized protein
STRINGXP_007153349.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-119C2H2-like zinc finger protein