PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G027100.1 | ||||||||
Common Name | PHAVU_003G027100g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | NAC | ||||||||
Protein Properties | Length: 417aa MW: 47142.1 Da PI: 4.5655 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.5 | 7.8e-34 | 58 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkk.vegkk....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atk.... 79 lp+G++F+P+d+e++++ L+k ve++k ++++ + ++e +i++++P++Lp + ++ + yfF+++ k+y+tg+rk+r +t+ Phvul.003G027100.1 58 LPKGVKFDPSDQEIIWHLLAKVgVEDSKphpfIDEFITnLEEDnGICYTHPQNLPG-IMQDGSASYFFHRAIKAYNTGNRKRRkITSqdfg 147 799************887777644444476663333333555547**********5.45667899******************54445665 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +++W++tg++k+++ +g+++g kk++v+y +gr k ekt+Wvmhey+l Phvul.003G027100.1 148 DARWHKTGRTKPIVF-NGAQKGWKKIMVLYenNGRGGKVEKTNWVMHEYHL 197 788************.999***********5556888889*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-39 | 44 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.046 | 58 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.7E-16 | 59 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MAGPSWLVDK SRIATKIKCA SGTCDPKTII WNSNPTKPCP NCQHDIDNSD VAQEWPGLPK 60 GVKFDPSDQE IIWHLLAKVG VEDSKPHPFI DEFITNLEED NGICYTHPQN LPGIMQDGSA 120 SYFFHRAIKA YNTGNRKRRK ITSQDFGDAR WHKTGRTKPI VFNGAQKGWK KIMVLYENNG 180 RGGKVEKTNW VMHEYHLGTK EDEHDGEYIF SKVFYQQQVK LGDKDDQDVP EAIESTIVEV 240 VPNTPNLVTL DALCNERQSA DLDQGQETHE IPQLSQMDCL YEIQEDYQEL ATESQHNEGV 300 DNKESNAEEG QKWWDSESQN LLDSQQLVDA LSLCDDLLHS QSPSRDGKHE DHKNNPGLSV 360 YAQLGPECLK KDIEECQNLV NDPANIENDT SSEFRLSQLE FGSQDSFISW GYKAVN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G027100.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-168 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007153341.1 | 0.0 | hypothetical protein PHAVU_003G027100g | ||||
Swissprot | Q6NQK2 | 1e-154 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | V7C7T7 | 0.0 | V7C7T7_PHAVU; Uncharacterized protein | ||||
STRING | XP_007153341.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5662 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-156 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G027100.1 |
Entrez Gene | 18633693 |