PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G007400.1
Common NamePHAVU_003G007400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 348aa    MW: 40592.4 Da    PI: 7.2674
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G007400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.71.3e-101099199
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
                        f+kv+  +++l++g++ +p +f+++h  g++  +   ++l  ++g + +v     +k+g +++ +GWkeF+k  +L++   +vF+  g+s+f 
  Phvul.003G007400.1 10 FLKVF-AEHNLQRGIMKVPTSFVSRHweGMS--N--PVILSLPNGSKNKVFW--VNKDGDVWFCNGWKEFAKYSKLDVSHLLVFE--GNSCF- 92
                        66666.899*****************85333..3..4999999999999999..99999**************************..88999. PP

                        .EEEEE-S CS
                  B3 92 lvvkvfrk 99
                         +v +f k
  Phvul.003G007400.1 93 -NVIIFGK 99
                        .7777765 PP
2B348.81.2e-15192280595
                         -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
                  B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                          +++ + ++++l++p +f   + +k+  +   tl  e+gr+Wev+ +  ++ g++v+++GW++F  +n+Lk gD++ F+ + + + f ++v
  Phvul.003G007400.1 192 IIRKTYIERDLLIMPEEFGILYRHKE--GNAATLFVEHGRTWEVQTK-VNSYGQFVFSSGWRKFLWDNKLKLGDVCAFHEMLDsEPFLFKV 279
                         5667788999********98998774..4578888999********5.4445679************************553337775555 PP

                         E CS
                  B3  95 k 95 
                         +
  Phvul.003G007400.1 280 T 280
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-147100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-157100IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.6989100IPR003340B3 DNA binding domain
CDDcd100172.33E-7997No hitNo description
PfamPF023621.5E-71097IPR003340B3 DNA binding domain
SMARTSM010190.004310100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-18181282IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-19182282IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.07188285IPR003340B3 DNA binding domain
SMARTSM010196.7E-7189285IPR003340B3 DNA binding domain
PfamPF023623.1E-13192279IPR003340B3 DNA binding domain
CDDcd100175.15E-13203283No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSSQCHGVHF LKVFAEHNLQ RGIMKVPTSF VSRHWEGMSN PVILSLPNGS KNKVFWVNKD  60
GDVWFCNGWK EFAKYSKLDV SHLLVFEGNS CFNVIIFGKS DLEIEYPLSR DATDEKVEEI  120
DEGSDFSLKN SEERSKRPRE EAQEEIPNKH IKIECSDYSN HNNTGDFKKK LIMFHEKVKE  180
TFKSNHEHFT CIIRKTYIER DLLIMPEEFG ILYRHKEGNA ATLFVEHGRT WEVQTKVNSY  240
GQFVFSSGWR KFLWDNKLKL GDVCAFHEML DSEPFLFKVT IYPLEDNSST SLFKVFLFNI  300
FNVHFQVKKE FLICLLHPLI HPLKQGHQSL EMISLSSSSQ KCRYDKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G007400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150434e-92AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153106.10.0hypothetical protein PHAVU_003G007400g
TrEMBLV7C7480.0V7C748_PHAVU; Uncharacterized protein
STRINGXP_007153106.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF140231017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-20B3 family protein