PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G004600.1
Common NamePHAVU_003G004600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 977aa    MW: 110029 Da    PI: 5.0922
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G004600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.73.5e-10433477246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g+WT+eEd+ l+  v+  G ++W  Ia+ +g+ Rt+ qc sr+q 
  Phvul.003G004600.1 433 GAWTKEEDKSLLLIVQDTGIRNWFEIAASLGTSRTPFQCLSRFQR 477
                         79*****************************************96 PP
2Myb_DNA-binding37.36.5e-12487529346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          WT+eEd +l  av+ +G g+W  +a+ +  +Rt+ qc +rw k
  Phvul.003G004600.1 487 EWTEEEDGQLCSAVTYFGDGNWQYVASVLE-RRTGTQCSNRWKK 529
                         7*****************************.***********98 PP
3Myb_DNA-binding41.82.5e-13536579146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g++T+eEd +l  av ++G + W+ Ia++++ gR   qc++r+++
  Phvul.003G004600.1 536 KGSFTEEEDIRLTVAVMLFGRK-WNQIAKYVP-GRIQSQCRDRYLN 579
                         799*****************99.*********.***********98 PP
4Myb_DNA-binding48.91.5e-15589630346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          WT+eEd++l  a++++G   W++Ia++++  Rt+ qc+ rw  
  Phvul.003G004600.1 589 GWTEEEDLRLEAAIAKHGYC-WSKIAEEVP-PRTDSQCRKRWKV 630
                         5*****************99.*********.9**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.471326426IPR017877Myb-like domain
SMARTSM007178.6E-4330428IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-10333349IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-10399438IPR009057Homeodomain-like
SuperFamilySSF466892.58E-16408476IPR009057Homeodomain-like
PROSITE profilePS500909.767427479IPR017877Myb-like domain
SMARTSM007176.0E-9431481IPR001005SANT/Myb domain
CDDcd001678.23E-7434479No hitNo description
PfamPF139214.6E-14435496No hitNo description
Gene3DG3DSA:1.10.10.601.7E-14439492IPR009057Homeodomain-like
PROSITE profilePS5129415.415480535IPR017930Myb domain
SuperFamilySSF466891.48E-22483577IPR009057Homeodomain-like
SMARTSM007175.7E-5484533IPR001005SANT/Myb domain
CDDcd001671.30E-7487531No hitNo description
Gene3DG3DSA:1.10.10.601.3E-16493542IPR009057Homeodomain-like
SMARTSM007175.2E-13535583IPR001005SANT/Myb domain
PfamPF002491.8E-12536579IPR001005SANT/Myb domain
PROSITE profilePS5129410.422536581IPR017930Myb domain
CDDcd001674.97E-8538581No hitNo description
Gene3DG3DSA:1.10.10.601.8E-18543587IPR009057Homeodomain-like
SuperFamilySSF466894.92E-23561633IPR009057Homeodomain-like
PROSITE profilePS5129424.1582636IPR017930Myb domain
SMARTSM007179.6E-14586634IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-17588632IPR009057Homeodomain-like
PfamPF002492.8E-14589630IPR001005SANT/Myb domain
CDDcd001673.37E-13590631No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 977 aa     Download sequence    Send to blast
MTPRVDDFDN LSSTDDDDDD DGFKEDMAAL SRACRIVVPG ADDYSAAEDG VPSEDPNIDA  60
STAIVSVATD SDSDDQDDLE CLKRVQSLYQ PLSVLPPLAP AALSEDDDDV DDLETVRAIM  120
KRFGDYNEGL REGGRKVLVE GDHASSMDCE GDIANGSIHN ESGGSELCPV SQDPNEAATE  180
ELIENIEKQL SDFVESSEPD AWESSRLPQK RLSCPPVVQC FIDAIKKNRD LQRFLRGKLI  240
ELEAKIEENK KIRNRIKILK DFQASCSRRT GNVLSLKKDP RVQLISAKKS SAPKKSKKRK  300
KVPAMCYGPE ENSHVANYRR VLERFPLSLD RKKWSKVERE NLLKGIKQQF QEMVLQLSLS  360
IDRTSSEGLL GEADDMDSII SSVKDLEVTP ERIRKFLPKV NWDLLASMYV GGHTGAECES  420
RWLNYEDPLI NQGAWTKEED KSLLLIVQDT GIRNWFEIAA SLGTSRTPFQ CLSRFQRSLN  480
PSMLNSEWTE EEDGQLCSAV TYFGDGNWQY VASVLERRTG TQCSNRWKKS LCPEKKGSFT  540
EEEDIRLTVA VMLFGRKWNQ IAKYVPGRIQ SQCRDRYLNS LDPSLKWGGW TEEEDLRLEA  600
AIAKHGYCWS KIAEEVPPRT DSQCRKRWKV LCPEQVPLLQ EARKKQRSII GSNFVDRESE  660
RPTITLNDFI PLPALASKSD IGASNLPKKR KSSNVPKKTS SKKRAKRIRR CTKEVQDTEV  720
YSDDDFYPVS SCSNLPKKNR SKIHAKSSRN CTQELVDISC SDKVKTCIEG PENQSTCIVN  780
SENQYSDNIT LSCFIRNKSN EILSRFTKNL SQTSFSSRIT DVPEQVESQN PSDYQSGLSQ  840
SYDTVGSLNL FVQPNSAFDR NPEDTNTLTN DDDDDMTLAS FIKKECQPAK GPDVCSSKLK  900
TGSVLLNEEH CASKPTIISD NSELSMSKHV EEMETVLRGC VAKPMDTIVE EKDDELSTSP  960
VQNRPRRERK RPSRFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-284016287155MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-284016287155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296300KKRKK
2963968RPRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G004600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153075.10.0hypothetical protein PHAVU_003G004600g
TrEMBLV7C4K50.0V7C4K5_PHAVU; Uncharacterized protein
STRINGXP_007153075.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74413344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.21e-158myb domain protein 4r1