PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G333100.1
Common NamePHAVU_002G333100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 710aa    MW: 78591.1 Da    PI: 7.0853
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G333100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81.1e-192580156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        r++ +++t+ q+++Le++F+++++p++++r +L+++lgL  rq+k+WFqNrR+++k
  Phvul.002G333100.1 25 RKRYHRHTSVQIQRLESMFRECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 80
                        788999***********************************************998 PP
2START171.26.8e-542294452206
                         HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
               START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                         +a +a++el+++++ +ep+W ks     + +n+d + ++f++ ++       + ea+r+s+vv  ++  l   ++d + +W+e ++     
  Phvul.002G333100.1 229 IASKAMEELLRLVQTNEPLWLKSNvdgrDVLNSDAYERIFPKPNSrpknpnVRLEASRDSAVVLINSLALADMFMDPN-KWTELFPtivsV 318
                         6889************************************9988899***99****************6666666666.*******9999* PP

                         EEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS
               START  79 aetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166
                         a+t++vissg  g l+lm+aelq+lsplv+ R+f+f+Ry++q ++g+w++vdvS d +q+        R++++pSg+li+++++g sk+tw
  Phvul.002G333100.1 319 ATTIQVISSGmgGSLHLMYAELQVLSPLVSsREFYFLRYCQQIEKGTWAVVDVSYDFPQDTH-----FRSHRRPSGCLIQDMPDGQSKITW 404
                         ************************************************************87.....8*********************** PP

                         EE-EE--SS.XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 167 vehvdlkgr.lphwllrslvksglaegaktwvatlqrqcek 206
                         vehv+ +++ lph l+r l+ sg+a+ a +w+atlqr ce+
  Phvul.002G333100.1 405 VEHVEIEDKtLPHRLFRNLIYSGMAFSAERWLATLQRMCER 445
                         ******876267***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.31E-20882IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-221284IPR009057Homeodomain-like
PROSITE profilePS5007117.8642282IPR001356Homeobox domain
SMARTSM003892.8E-182386IPR001356Homeobox domain
CDDcd000863.44E-182483No hitNo description
PfamPF000462.0E-172580IPR001356Homeobox domain
PROSITE patternPS0002705780IPR017970Homeobox, conserved site
PROSITE profilePS5084852.17219448IPR002913START domain
SuperFamilySSF559611.14E-36220446No hitNo description
CDDcd088751.37E-110223444No hitNo description
SMARTSM002341.7E-44228445IPR002913START domain
PfamPF018529.8E-46229445IPR002913START domain
Gene3DG3DSA:3.30.530.209.5E-10288429IPR023393START-like domain
SuperFamilySSF559617.79E-20468687No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MEYGSGGAGS PSAGEHDASD SQEKRKRYHR HTSVQIQRLE SMFRECPHPD EKQRLQLSRE  60
LGLAPRQIKF WFQNRRTQMK AQHERADNCT LRADNDKIRC ENIAIREALK NVICPSCGGP  120
PLNDDSYFDD QKLRLENAHL KEELDRVSSI AAKYIGRPIS QLPPVQPIHL SSLDLSMSCF  180
GNQALVDHVP AHSPSLNLDL LSAGTSSLPN MPYQPPYLSD MDKSLMSDIA SKAMEELLRL  240
VQTNEPLWLK SNVDGRDVLN SDAYERIFPK PNSRPKNPNV RLEASRDSAV VLINSLALAD  300
MFMDPNKWTE LFPTIVSVAT TIQVISSGMG GSLHLMYAEL QVLSPLVSSR EFYFLRYCQQ  360
IEKGTWAVVD VSYDFPQDTH FRSHRRPSGC LIQDMPDGQS KITWVEHVEI EDKTLPHRLF  420
RNLIYSGMAF SAERWLATLQ RMCERLTYLM VTPNSTRDNP GGVISSAEGK RSMMKLAQRM  480
VSNFCASIGT SSGRRWTTIS GFNEILIRVT VHKSSNPGQP NSVVLSAATT IWLPTPPHTV  540
FNFFKDETKR PQWDVLSNGN AVQEVAQIAN GPHPGNSISV LRAFNTSQNM LILQESCIDS  600
SGSLVVYCPV DLPSMNIAMS GEDTSCIPLL PNGFTILPDG QAEQEGDGAS TSSNGNRNKG  660
RSGGSLVTVA FQILVSSSPS AKLNMEVTTV SNLIASTVNQ IKASFTCPT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G333100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160572.10.0hypothetical protein PHAVU_002G333100g
SwissprotQ9FX310.0HDG11_ARATH; Homeobox-leucine zipper protein HDG11
TrEMBLV7CUI60.0V7CUI6_PHAVU; Uncharacterized protein
STRINGXP_007160572.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Cai XT,Xu P,Wang Y,Xiang CB
    Activated expression of AtEDT1/HDG11 promotes lateral root formation in Arabidopsis mutant edt1 by upregulating jasmonate biosynthesis.
    J Integr Plant Biol, 2015. 57(12): p. 1017-30
    [PMID:25752924]
  5. Yu LH, et al.
    Arabidopsis EDT1/HDG11 improves drought and salt tolerance in cotton and poplar and increases cotton yield in the field.
    Plant Biotechnol. J., 2016. 14(1): p. 72-84
    [PMID:25879154]
  6. Zhu Z, et al.
    Overexpression of AtEDT1/HDG11 in Chinese Kale (Brassica oleracea var. alboglabra) Enhances Drought and Osmotic Stress Tolerance.
    Front Plant Sci, 2016. 7: p. 1285
    [PMID:27625663]
  7. Liu Y, et al.
    Overexpression of AtEDT1 promotes root elongation and affects medicinal secondary metabolite biosynthesis in roots of transgenic Salvia miltiorrhiza.
    Protoplasma, 2017. 254(4): p. 1617-1625
    [PMID:27915455]
  8. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  9. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  10. Zheng G, et al.
    Over-Expression of Arabidopsis EDT1 Gene Confers Drought Tolerance in Alfalfa (Medicago sativa L.).
    Front Plant Sci, 2017. 8: p. 2125
    [PMID:29326737]