PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G332400.1 | ||||||||
Common Name | PHAVU_002G332400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 158aa MW: 17206.2 Da PI: 9.3034 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 86.7 | 2.4e-27 | 10 | 58 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 k +Y+eCl+NhAaslG++a+DGCgEf+ + + +l+CaACgCHRnFHR+ + Phvul.002G332400.1 10 KSVYRECLRNHAASLGSYATDGCGEFTLD------SGGLQCAACGCHRNFHRKVK 58 568************************98......679**************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.4E-22 | 12 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.6E-21 | 13 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-17 | 13 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 20.213 | 13 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 5.61E-15 | 67 | 136 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 71 | 138 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.5E-28 | 78 | 136 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MEGGSGEKWK SVYRECLRNH AASLGSYATD GCGEFTLDSG GLQCAACGCH RNFHRKVKYP 60 VGPESPGAMD YGGEGGSKKR FRSKFSADQK EKMLAFAEKL GWKLQRKDLD DEIERFCRSI 120 GVSRQVFKVW MHNHKNSSSS SSASASASTG NISSLTH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 7e-24 | 77 | 141 | 16 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G332400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-175 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007160565.1 | 1e-114 | hypothetical protein PHAVU_002G332400g | ||||
Swissprot | Q9SB61 | 7e-41 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | V7CR10 | 1e-112 | V7CR10_PHAVU; Uncharacterized protein | ||||
STRING | XP_007160565.1 | 1e-113 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7982 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 7e-42 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G332400.1 |
Entrez Gene | 18639893 |
Publications ? help Back to Top | |||
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