PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G328700.2
Common NamePHAVU_002G328700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 308aa    MW: 34817.1 Da    PI: 6.5842
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G328700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.75.6e-33632031128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.. 79 
                         lp+G++F+P+d+e++ e+L++kv  +       ++  e   +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++  
  Phvul.002G328700.2  63 LPAGVKFDPNDQEIL-EHLEAKVLCDVpklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVHtd 149
                         799***********9.99****9998856643322..22222333336**********.555666777******************74444 PP

                 NAM  80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                             + +W++tgk+++v++ +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Phvul.002G328700.2 150 eegsETRWHKTGKTRPVFV-GGAVKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 203
                         6555778************.9*************6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-3858222IPR003441NAC domain
PROSITE profilePS5100533.35263222IPR003441NAC domain
PfamPF023651.2E-1464203IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MTWCNDSDEE RGIELLAPTL TPTTNNTLLT DTKPSENRTI TCPSCGHNIE FQDQTGINDL  60
PGLPAGVKFD PNDQEILEHL EAKVLCDVPK LHPLIDEFIP TLEGENGICY THPEKLPGVS  120
KDGQIRHFFH RPSKAYTTGT RKRRKVHTDE EGSETRWHKT GKTRPVFVGG AVKGFKKILV  180
LYTNYGRQKK PEKTNWVMHQ YHLGSNEEEK DGELVVSKVF YQTQPRQCGN SITKQDLYQS  240
VDDEDIIPRS GTLMEYYNPS FINYDHVGGR NNREASPQLI PNLVMQADTS SFIRLAMDAT  300
KARLDTK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G328700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-147AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160521.10.0hypothetical protein PHAVU_002G328700g
RefseqXP_007160522.10.0hypothetical protein PHAVU_002G328700g
SwissprotO494591e-123NAC73_ARATH; NAC domain-containing protein 73
TrEMBLV7CUD50.0V7CUD5_PHAVU; Uncharacterized protein
STRINGXP_007160521.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-122NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]