PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G316500.1
Common NamePHAVU_002G316500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 318aa    MW: 35751.1 Da    PI: 7.2133
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G316500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.51.3e-5351301128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+++yL +kv++ +++  +v++ vd++k+ePwdLp k++ +ekewyfFs +d+ky+tg r+nrat+sgyWk+tgkdke
  Phvul.002G316500.1   5 LPPGFRFHPTDEELITYYLLRKVSDISFTS-KVVAVVDLNKSEPWDLPGKASMGEKEWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDKE 94 
                         79*************************999.89***************988999************************************* PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         v+  +g l+g+kktLvfy grap+gek++Wvmheyrl
  Phvul.002G316500.1  95 VFG-GGVLIGMKKTLVFYMGRAPRGEKSNWVMHEYRL 130
                         ***.*******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-643151IPR003441NAC domain
PROSITE profilePS5100560.2155151IPR003441NAC domain
PfamPF023653.5E-296130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT YYLLRKVSDI SFTSKVVAVV DLNKSEPWDL PGKASMGEKE  60
WYFFSLKDRK YPTGLRTNRA TESGYWKTTG KDKEVFGGGV LIGMKKTLVF YMGRAPRGEK  120
SNWVMHEYRL QNKQPYRSSK EEWVICRVFQ KSSAPKKSQQ TSSSQPSEES PTSMVNEFGD  180
ADLPNLNATI ANSSTIAGQQ TYNNGDPINV NTNMNLTMNW PSATDLPSLP WPSGLLLNPN  240
LSVNSLLLRA LQLRSTYHHQ REAATSDHHF ATYVPQTFPH NDIGTDNLTP NLSASASSRA  300
LESCVLQEQP FNMDSIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-57415716171NO APICAL MERISTEM PROTEIN
1ut4_B6e-57415716171NO APICAL MERISTEM PROTEIN
1ut7_A6e-57415716171NO APICAL MERISTEM PROTEIN
1ut7_B6e-57415716171NO APICAL MERISTEM PROTEIN
3swm_A6e-57415719174NAC domain-containing protein 19
3swm_B6e-57415719174NAC domain-containing protein 19
3swm_C6e-57415719174NAC domain-containing protein 19
3swm_D6e-57415719174NAC domain-containing protein 19
3swp_A6e-57415719174NAC domain-containing protein 19
3swp_B6e-57415719174NAC domain-containing protein 19
3swp_C6e-57415719174NAC domain-containing protein 19
3swp_D6e-57415719174NAC domain-containing protein 19
4dul_A6e-57415716171NAC domain-containing protein 19
4dul_B6e-57415716171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G316500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-161AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160376.10.0hypothetical protein PHAVU_002G316500g
TrEMBLV7CSX10.0V7CSX1_PHAVU; Uncharacterized protein
STRINGXP_007160376.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49463356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.12e-97NAC domain containing protein 58