PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G316100.1
Common NamePHAVU_002G316100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family CO-like
Protein Properties Length: 370aa    MW: 41213.9 Da    PI: 5.5128
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G316100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.55.8e-081558340
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                        +r C+ + + ++++fC  ++ +lC+ C +  H+       H++v
  Phvul.002G316100.1 15 ARACDSCISRRARWFCAADDAFLCHGCDTLVHSAnqlasrHERV 58
                        578*****************************657788888876 PP
2CCT66.85.8e-23314356143
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                         Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+
  Phvul.002G316100.1 314 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKR 356
                         9****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.3241360IPR000315B-box-type zinc finger
SMARTSM003365.0E-91360IPR000315B-box-type zinc finger
PfamPF006432.5E-61558IPR000315B-box-type zinc finger
CDDcd000212.52E-81660No hitNo description
PfamPF062038.1E-18314356IPR010402CCT domain
PROSITE profilePS5101715.993314356IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MRDMKDAGAL GAKTARACDS CISRRARWFC AADDAFLCHG CDTLVHSANQ LASRHERVRL  60
QTASSKVATT THAWHSGFTR KARTPRHNNN SKHSALQQRL KEEVLFNNGS VLPLVPELGG  120
EEQETVVVDN DETEEQMLCR VPVFDNYDVR TDDLDSFSDM DFAEFAADVE NLLVKEDDER  180
SACVGGGVQG AMAKVKDEED IDGDVACYLE SVFDMSNDDT LHWNSIESVL SDAGEEKACV  240
VASDGGVGEE EGTKRDIFLR LNYDEVISAW STQGSSPWTT SNPPKFNSGY DFCLGLSGVD  300
GEVRSLRGHL DGGREARVSR YREKRRTRLF AKKIRYEVRK LNAEKRPRMK GRFVKRTCFV  360
GVNAFPAYQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324340RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G316100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160372.10.0hypothetical protein PHAVU_002G316100g
SwissprotQ8RWD03e-83COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLV7CTZ20.0V7CTZ2_PHAVU; Uncharacterized protein
STRINGXP_007160372.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-78B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]