PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G295700.1
Common NamePHAVU_002G295700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 310aa    MW: 34265 Da    PI: 4.7533
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G295700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-19103153256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                         +++GVr+++ +g+W+AeIrdps    r  r +lg+++taeeAa  +++a+ +l+g+
  Phvul.002G295700.1 103 KFRGVRQRP-WGKWAAEIRDPS----RrVRLWLGTYDTAEEAAIVYDNAAIQLRGA 153
                         89*******.**********84....34*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-29102160IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-21103160IPR016177DNA-binding domain
CDDcd000187.76E-31103159No hitNo description
SMARTSM003806.8E-37103166IPR001471AP2/ERF domain
PfamPF008472.5E-12103152IPR001471AP2/ERF domain
PROSITE profilePS5103223.156103160IPR001471AP2/ERF domain
PRINTSPR003674.9E-10104115IPR001471AP2/ERF domain
PRINTSPR003674.9E-10126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MASSTIKQTE HLNRTKLLVE EDALLKSHHH PKLVRIRVTD ADATDSSSED EDQPSVSSTR  60
RRVKSFVNEI TIHGAAGVKV VSRKRKVKSA NAQALRRRTE ARKFRGVRQR PWGKWAAEIR  120
DPSRRVRLWL GTYDTAEEAA IVYDNAAIQL RGADALTNFV TPPAEEGIKS GYCSGEEELR  180
SPTSVLRCCW ASEEVESVTA NDAVGPASEC EHSCFSEDSK SKDETVFGIP DDVAFGFEST  240
LGMFDECANN VAQSSGIFLD DEFDLSGCFV SEKENLDLGF GFGSTSWQRE CDNFQDIGDL  300
FVWDPLVAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-20102159159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G295700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160137.10.0hypothetical protein PHAVU_002G295700g
TrEMBLV7CTB10.0V7CTB1_PHAVU; Uncharacterized protein
STRINGXP_007160137.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-49cytokinin response factor 2