PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.002G286000.2 | ||||||||
Common Name | PHAVU_002G286000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 384aa MW: 41909.8 Da PI: 8.646 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.3 | 1.6e-41 | 94 | 170 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCevhsk+++v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ Phvul.002G286000.2 94 CLVDGCNSDLSNCRDYHRRHKVCEVHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 170 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 8.7E-34 | 87 | 155 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.949 | 91 | 168 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.55E-39 | 92 | 173 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.3E-30 | 94 | 167 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 384 aa Download sequence Send to blast |
MDWNLKAPSW DLSEVDQANL PNMETMEGSS RYGMFRSKGE FSVDLKLGQV GNSGMESVLT 60 KNKDAVGVSK ITSSSSGSSK RARALGNGTQ TVSCLVDGCN SDLSNCRDYH RRHKVCEVHS 120 KTAQVTIGGQ KQRFCQQCSR FHSLEEFDEG KRSCRKRLDG HNRRRRKPQP EPLTRSGSFL 180 SNYQGTQLLP FSSSHVYPST TVMNPTWGGI VASGDGRLHG HNQQHHNQGE LFLGSSPTGY 240 KEGKQLAFMQ ADHTLNNQSP HLPGGSVGQA QMFLRAGPYS ESGGLRCKML CDNLTGSVHD 300 SSRALSLLSS PQPHSPGNGL SPMVNPHSMQ PLGLSLHDHN SLEAVDPVLG LNGSDHHSSS 360 MYNIVLMDPR GTKPPPLFPF QWE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-29 | 94 | 167 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 150 | 167 | KRSCRKRLDGHNRRRRKP |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00555 | DAP | Transfer from AT5G50570 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.002G286000.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007160020.1 | 0.0 | hypothetical protein PHAVU_002G286000g | ||||
Refseq | XP_007160021.1 | 0.0 | hypothetical protein PHAVU_002G286000g | ||||
TrEMBL | V7CPE7 | 0.0 | V7CPE7_PHAVU; Uncharacterized protein | ||||
STRING | XP_007160020.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G50670.1 | 9e-79 | SBP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.002G286000.2 |
Entrez Gene | 18639417 |