PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G286000.1
Common NamePHAVU_002G286000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family SBP
Protein Properties Length: 384aa    MW: 41909.8 Da    PI: 8.646
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G286000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.31.6e-4194170278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         C v+gC++dls++++yhrrhkvCevhsk+++v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  Phvul.002G286000.1  94 CLVDGCNSDLSNCRDYHRRHKVCEVHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 170
                         **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.7E-3487155IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.94991168IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.55E-3992173IPR004333Transcription factor, SBP-box
PfamPF031101.3E-3094167IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MDWNLKAPSW DLSEVDQANL PNMETMEGSS RYGMFRSKGE FSVDLKLGQV GNSGMESVLT  60
KNKDAVGVSK ITSSSSGSSK RARALGNGTQ TVSCLVDGCN SDLSNCRDYH RRHKVCEVHS  120
KTAQVTIGGQ KQRFCQQCSR FHSLEEFDEG KRSCRKRLDG HNRRRRKPQP EPLTRSGSFL  180
SNYQGTQLLP FSSSHVYPST TVMNPTWGGI VASGDGRLHG HNQQHHNQGE LFLGSSPTGY  240
KEGKQLAFMQ ADHTLNNQSP HLPGGSVGQA QMFLRAGPYS ESGGLRCKML CDNLTGSVHD  300
SSRALSLLSS PQPHSPGNGL SPMVNPHSMQ PLGLSLHDHN SLEAVDPVLG LNGSDHHSSS  360
MYNIVLMDPR GTKPPPLFPF QWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-29941671184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150167KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G286000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160020.10.0hypothetical protein PHAVU_002G286000g
RefseqXP_007160021.10.0hypothetical protein PHAVU_002G286000g
TrEMBLV7CPE70.0V7CPE7_PHAVU; Uncharacterized protein
STRINGXP_007160020.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.19e-79SBP family protein