PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G266400.1 | ||||||||
Common Name | PHAVU_002G266400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | WRKY | ||||||||
Protein Properties | Length: 230aa MW: 26058.3 Da PI: 9.2294 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.5 | 2.5e-32 | 152 | 210 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ Phvul.002G266400.1 152 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 210 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-33 | 137 | 210 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.01E-28 | 144 | 211 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.356 | 147 | 212 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.8E-37 | 152 | 211 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.4E-25 | 153 | 209 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MSTTSHTIAH HSLFEEQDQI PTQMGFFPFP TNLTLPPLGC HQSSLKAFSS ITPSSLAISQ 60 QDSTSNLTET LFQKSREDLT SGFGGAQFLS LHRSSVNPWA LGEVTDCFSS KRSGFDDHHL 120 GISAMKMKKM KARRKVREPR FCFKTMSDVD VLDDGYKWRK YGQKVVKNTQ HPRSYYRCTQ 180 DNCRVKKRVE RLAEDPRMVI TTYEGRHVHS PSNDLEDSSS ASQLGNFLW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-27 | 143 | 209 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 6e-27 | 143 | 209 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G266400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090914 | 0.0 | BT090914.1 Soybean clone JCVI-FLGm-5N5 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007159778.1 | 1e-173 | hypothetical protein PHAVU_002G266400g | ||||
TrEMBL | V7CNJ4 | 1e-172 | V7CNJ4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007159778.1 | 1e-173 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4079 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 5e-55 | WRKY DNA-binding protein 13 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G266400.1 |
Entrez Gene | 18639213 |