PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G264300.1 | ||||||||
Common Name | PHAVU_002G264300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | NF-YB | ||||||||
Protein Properties | Length: 226aa MW: 24822.6 Da PI: 7.5694 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 180.4 | 1.5e-56 | 27 | 122 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 +eqdrflPianvsrimk++lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv plk+yl++yre Phvul.002G264300.1 27 KEQDRFLPIANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKLYLHNYRE 117 89***************************************************************************************** PP NF-YB 93 legek 97 +egek Phvul.002G264300.1 118 TEGEK 122 **997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.3E-55 | 23 | 143 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.11E-41 | 29 | 141 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.7E-27 | 32 | 96 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.4E-18 | 60 | 78 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 63 | 79 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 2.4E-18 | 79 | 97 | No hit | No description |
PRINTS | PR00615 | 2.4E-18 | 98 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MTGKRNQTII SPVGSPTSGN ISDSSSKEQD RFLPIANVSR IMKRALPANA KISKEAKETV 60 QECVSEFISF ITGEASDKCQ REKRKTINGD DLLWAMTTLG FENYVGPLKL YLHNYRETEG 120 EKSSMAKQEE HSPTDQTHQT NDGVSELNKL PHSVTTKADF NTFSGGFYSV GSRVTAPKTF 180 TDIGGINGYR DSSMNSIIAQ SAVSGDQDAS GNRLMPPNLR YRVEW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 7e-48 | 27 | 117 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 7e-48 | 27 | 117 | 2 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G264300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007159754.1 | 1e-169 | hypothetical protein PHAVU_002G264300g | ||||
TrEMBL | V7CQX4 | 1e-168 | V7CQX4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007159754.1 | 1e-169 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF591 | 34 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 3e-64 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G264300.1 |
Entrez Gene | 18639190 |