PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.002G263400.1

Common Name

PHAVU_002G263400g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

bZIP

Protein Properties

Length: 369aa MW: 42219.1 Da PI: 6.6562

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.002G263400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.7	3.3e-10	81	111	3	33
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee 33 ++k +rr+++NReAAr+sR+R+ka++++Le Phvul.002G263400.1 81 ADKTQRRLAQNREAARKSRLRRKAYVQQLES 111 5899*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.0E-4	79	139	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.508	81	111	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.2E-7	81	125	No hit	No description
Pfam	PF00170	2.4E-8	82	111	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.78E-7	83	123	No hit	No description
PROSITE pattern	PS00036	0	86	101	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.8E-29	170	244	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MDASSSQFVS TRRMEVYDPI HQLSMWEENF KSNVNTLTAS TSIIEELDMK LDNQVQVQSE 60 EISHGIFGTS VNYNQDHNRL ADKTQRRLAQ NREAARKSRL RRKAYVQQLE SCRLKLMHLE 120 QEVDHAKQQG LYIGDGLGSN NLGFAGSVNS GITIFKMEYE HWVEEQNRHI LEMRTALSSH 180 IGDIQLGKLV KSIMDHYSKL FSMKSAAAKA DVFYVMSGMW MTTAERFFLW IGGFRPSELL 240 KVLVPLSEPL TEQQRFDTYG LEKSCQQAED ALSQGMEKLQ QMLADSVGPG HLVEGTHIPQ 300 MDTAMERMEA LVSFVNQADH LRQETLRQMY RILSIREIGQ FLVVLGEYFQ RLRALSKLWA 360 NRSQESLA*

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MDASSSQFVS TRRMEVYDPI HQLSMWEENF KSNVNTLTAS TSIIEELDMK LDNQVQVQSE  60
EISHGIFGTS VNYNQDHNRL ADKTQRRLAQ NREAARKSRL RRKAYVQQLE SCRLKLMHLE  120
QEVDHAKQQG LYIGDGLGSN NLGFAGSVNS GITIFKMEYE HWVEEQNRHI LEMRTALSSH  180
IGDIQLGKLV KSIMDHYSKL FSMKSAAAKA DVFYVMSGMW MTTAERFFLW IGGFRPSELL  240
KVLVPLSEPL TEQQRFDTYG LEKSCQQAED ALSQGMEKLQ QMLADSVGPG HLVEGTHIPQ  300
MDTAMERMEA LVSFVNQADH LRQETLRQMY RILSIREIGQ FLVVLGEYFQ RLRALSKLWA  360
NRSQESLA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.002G263400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007159742.1	0.0	hypothetical protein PHAVU_002G263400g
Refseq	XP_007159743.1	0.0	hypothetical protein PHAVU_002G263400g
Refseq	XP_007159744.1	0.0	hypothetical protein PHAVU_002G263400g
Swissprot	Q39237	1e-164	TGA1_ARATH; Transcription factor TGA1
TrEMBL	V7CS43	0.0	V7CS43_PHAVU; Uncharacterized protein
STRING	XP_007159742.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-166	bZIP family protein

Link Out ? help Back to Top
Phytozome	Phvul.002G263400.1
Entrez Gene	18639181

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]